Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3574

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81058 to 83632 11941 mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84191 to 85564 11942 mRNA_3575: 11943 - Hypothetical Protein, at 86235 to 86923 11943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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83,693 - 0.5
83,736 + 1.5
83,855 - -0.3
83,855 - 1.4
83,872 + 1.0
84,027 + 1.6
84,149 - 2.8
84,311 - -0.0
84,340 - 11942 mRNA_3574 0.11 -0.1
84,591 + 11942 mRNA_3574 0.29 0.4
84,603 + 11942 mRNA_3574 0.30 3.2
84,826 + 11942 mRNA_3574 0.46 3.2
85,086 + 11942 mRNA_3574 0.65 1.5
85,219 + 11942 mRNA_3574 0.75 1.2
85,317 + 11942 mRNA_3574 0.82 -0.3
85,639 + 0.7
85,663 + -1.0
85,975 - -0.1
86,126 - -1.1
86,232 - 3.0
86,396 - 11943 mRNA_3575 0.23 1.1
86,400 + 11943 mRNA_3575 0.24 0.4