Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3569

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70969 to 72030 11936 mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72269 to 75186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75276 to 76903 11938

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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72,002 + 0.1
72,007 - 0.1
72,231 - -0.4
72,267 - -0.2
72,271 + -0.7
72,390 + 2.2
72,425 + 1.2
72,716 - 11937 mRNA_3569 0.15 0.3
72,730 - 11937 mRNA_3569 0.16 0.7
72,821 - 11937 mRNA_3569 0.19 -0.2
72,857 - 11937 mRNA_3569 0.20 0.2
72,862 + 11937 mRNA_3569 0.20 0.4
72,928 - 11937 mRNA_3569 0.23 1.4
73,022 + 11937 mRNA_3569 0.26 0.9
73,170 - 11937 mRNA_3569 0.31 0.5
73,736 + 11937 mRNA_3569 0.50 1.0
73,736 + 11937 mRNA_3569 0.50 -0.5
73,879 + 11937 mRNA_3569 0.55 -0.3
74,047 - 11937 mRNA_3569 0.61 -0.7
74,631 - 11937 mRNA_3569 0.81 -0.1
74,771 - 11937 mRNA_3569 0.86 -1.4
74,786 - 11937 mRNA_3569 0.86 1.4
74,794 + 11937 mRNA_3569 0.87 -1.0
74,802 - 11937 mRNA_3569 0.87 0.5
74,812 - 11937 mRNA_3569 0.87 1.6
74,840 - 11937 mRNA_3569 0.88 -0.4
74,932 - 0.3
74,934 - 2.2
74,936 - 0.5
74,939 - -1.2
74,963 + 0.8
74,965 + 0.4
75,062 + 1.9
75,087 - -0.3
75,087 - -0.7
75,105 + 0.0
75,119 + -0.0
75,119 + -0.3
75,122 - 2.2
75,123 - -0.1
75,271 + 1.8
75,548 - 11938 mRNA_3570 0.17 -0.1
75,558 + 11938 mRNA_3570 0.17 -1.5
75,807 + 11938 mRNA_3570 0.33 1.0
75,994 + 11938 mRNA_3570 0.44 0.6
76,099 - 11938 mRNA_3570 0.51 1.3
76,125 + 11938 mRNA_3570 0.52 -0.9