Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3566

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934 mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70046 to 70788 11935

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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67,345 - 11933 mRNA_3565 0.84 0.9
67,730 + 0.7
67,893 - -1.5
67,913 + -0.9
67,917 - 0.0
68,040 - 2.2
68,047 + 0.2
68,052 - 0.8
68,063 - 1.5
68,072 + 1.0
68,075 + 0.8
68,165 - -0.4
68,174 + -0.5
68,174 - 1.7
68,209 + -0.3
68,209 - 0.4
68,214 - 0.9
68,217 + 2.0
68,226 - 0.9
68,226 + 0.3
68,227 + 3.8
68,238 - 0.3
68,239 - -0.6
68,246 + 0.7
68,259 + 2.8
68,289 - -0.2
68,314 + 0.7
68,356 - -0.6
68,390 + 1.2
68,392 - 1.2
68,395 - 0.9
68,500 + 11934 mRNA_3566 0.15 -0.1
68,647 + 11934 mRNA_3566 0.28 1.0
68,665 + 11934 mRNA_3566 0.29 -0.1
68,939 - 11934 mRNA_3566 0.53 -0.9
69,236 + 11934 mRNA_3566 0.79 0.1
69,406 - 0.5
69,416 + 0.1
69,522 - 1.6
69,532 + 1.3
69,728 + -0.8
69,827 - 1.6