Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3564

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3563: 11931 - Hypothetical Protein, at 61951 to 62967 11931 mRNA_3564: 11932 - Hypothetical Protein, at 63584 to 64390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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62,588 + 11931 mRNA_3563 0.63 -0.5
62,601 + 11931 mRNA_3563 0.64 -0.1
62,894 + -0.4
63,002 + 1.0
63,003 - 2.6
63,020 + 0.5
63,026 + 0.4
63,044 - -1.4
63,504 + -0.2
63,533 + -0.3
63,625 + 2.8
63,645 + 3.1
63,646 - -0.5
63,691 - 11932 mRNA_3564 0.13 0.3
63,696 + 11932 mRNA_3564 0.14 -0.4
63,696 + 11932 mRNA_3564 0.14 0.7
63,735 + 11932 mRNA_3564 0.19 -0.5
63,744 + 11932 mRNA_3564 0.20 -0.1
63,758 + 11932 mRNA_3564 0.22 -0.1
63,758 - 11932 mRNA_3564 0.22 -1.7
63,778 - 11932 mRNA_3564 0.24 -0.0
63,780 - 11932 mRNA_3564 0.24 2.1
63,795 + 11932 mRNA_3564 0.26 0.3
63,796 - 11932 mRNA_3564 0.26 1.9
63,809 - 11932 mRNA_3564 0.28 1.1
63,817 + 11932 mRNA_3564 0.29 -1.7
63,826 + 11932 mRNA_3564 0.30 0.9
63,842 - 11932 mRNA_3564 0.32 -0.2
63,850 + 11932 mRNA_3564 0.33 0.1
63,914 - 11932 mRNA_3564 0.41 -0.5
63,982 - 11932 mRNA_3564 0.49 1.8
63,992 - 11932 mRNA_3564 0.51 1.8
63,996 - 11932 mRNA_3564 0.51 0.1
63,998 + 11932 mRNA_3564 0.51 -1.2
64,015 + 11932 mRNA_3564 0.53 1.3
64,058 + 11932 mRNA_3564 0.59 1.4
64,095 + 11932 mRNA_3564 0.63 -0.8
64,132 - 11932 mRNA_3564 0.68 2.6
64,239 - 11932 mRNA_3564 0.81 -0.9
64,242 - 11932 mRNA_3564 0.82 -0.6
64,252 + 11932 mRNA_3564 0.83 0.7
64,267 + 11932 mRNA_3564 0.85 -2.2
64,298 - 11932 mRNA_3564 0.88 -0.2
64,362 - 2.2
64,392 - 0.1
64,403 - -0.4
64,416 - 0.5
64,425 - 1.2
64,518 + 1.7
64,528 + -0.5
64,575 + -1.0
64,658 + 0.8
64,699 + -0.3
64,730 + -0.6
64,733 - 0.7
64,756 - 0.1
65,032 + -1.3
65,051 + -0.0
65,056 + 0.6
65,205 - 11933 mRNA_3565 0.13 1.6
65,389 - 11933 mRNA_3565 0.19 -0.5