Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3557

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44062 to 47314 11926

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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40,937 + -2.0
40,974 + -0.2
41,079 - -0.5
41,080 - 0.2
41,082 - 0.4
41,084 + -1.1
41,224 + 1.9
41,226 - 0.8
41,227 + 1.2
41,234 + 1.6
41,242 + 0.3
41,261 - 1.3
41,369 - 0.5
41,371 - 0.6
41,391 - 2.2
41,396 + -0.2
41,405 + 1.4
41,564 - 0.5
41,678 - -1.3
41,692 - 11925 mRNA_3557 0.10 -0.1
41,692 + 11925 mRNA_3557 0.10 0.4
41,827 + 11925 mRNA_3557 0.16 -0.6
41,842 + 11925 mRNA_3557 0.16 0.2
42,011 - 11925 mRNA_3557 0.23 0.1
42,580 + 11925 mRNA_3557 0.46 0.2
42,690 - 11925 mRNA_3557 0.51 2.1
42,696 + 11925 mRNA_3557 0.51 0.2
42,864 - 11925 mRNA_3557 0.58 1.5
43,028 - 11925 mRNA_3557 0.64 1.3
43,320 - 11925 mRNA_3557 0.76 3.9
43,869 - 0.7
43,894 - 0.0
43,895 + 1.1
44,664 - 11926 mRNA_3558 0.19 -0.4