Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,505 + -0.9
37,550 - 0.4
37,558 - 0.4
37,568 - 0.3
37,569 + -1.7
37,571 + 0.0
37,609 + -0.8
37,610 - 0.0
37,630 - 11923 mRNA_3555 0.12 0.2
37,630 + 11923 mRNA_3555 0.12 0.5
37,632 + 11923 mRNA_3555 0.12 1.5
37,636 + 11923 mRNA_3555 0.13 1.0
37,646 + 11923 mRNA_3555 0.14 1.3
37,650 - 11923 mRNA_3555 0.15 -0.9
37,684 - 11923 mRNA_3555 0.19 0.9
37,746 + 11923 mRNA_3555 0.27 0.0
37,753 + 11923 mRNA_3555 0.28 -0.7
37,760 + 11923 mRNA_3555 0.29 1.5
37,763 + 11923 mRNA_3555 0.29 0.6
37,812 - 11923 mRNA_3555 0.36 1.8
37,822 - 11923 mRNA_3555 0.37 1.9
37,833 + 11923 mRNA_3555 0.38 0.7
37,833 - 11923 mRNA_3555 0.38 -2.1
37,835 + 11923 mRNA_3555 0.38 2.4
37,844 - 11923 mRNA_3555 0.40 -0.7
37,848 - 11923 mRNA_3555 0.40 -2.3
37,861 + 11923 mRNA_3555 0.42 2.3
37,865 - 11923 mRNA_3555 0.42 -1.3
37,867 + 11923 mRNA_3555 0.43 0.7
37,870 + 11923 mRNA_3555 0.43 0.9
37,871 + 11923 mRNA_3555 0.43 -1.5
37,877 + 11923 mRNA_3555 0.44 2.3
37,885 - 11923 mRNA_3555 0.45 2.2
37,920 + 11923 mRNA_3555 0.49 -0.6
37,920 + 11923 mRNA_3555 0.49 1.5
37,924 + 11923 mRNA_3555 0.50 0.3
37,931 + 11923 mRNA_3555 0.51 1.0
37,979 + 11923 mRNA_3555 0.57 1.5
37,984 + 11923 mRNA_3555 0.58 1.5
37,994 + 11923 mRNA_3555 0.59 0.4
38,032 + 11923 mRNA_3555 0.64 -0.0
38,081 - 11923 mRNA_3555 0.70 -0.6
38,081 - 11923 mRNA_3555 0.70 2.3
38,084 - 11923 mRNA_3555 0.71 0.2
38,086 + 11923 mRNA_3555 0.71 -0.3
38,090 + 11923 mRNA_3555 0.71 -1.0
38,115 + 11923 mRNA_3555 0.75 1.5
38,128 + 11923 mRNA_3555 0.76 0.8
38,163 - 11923 mRNA_3555 0.81 -1.9
38,183 + 11923 mRNA_3555 0.83 -1.3
38,193 + 11923 mRNA_3555 0.85 0.0
38,234 + 11923 mRNA_3555 0.90 1.2
38,253 - -0.9
38,254 - 0.4
38,256 - -0.6
38,257 + 0.7
38,258 - -0.1
38,258 - 0.2
38,269 + 0.0
38,272 + 0.9
38,275 + -0.5
38,285 + 0.9
38,411 + -0.0
38,421 - -1.4
38,431 - 0.9
38,476 + -0.3
38,548 + 0.5
38,580 + 0.6
38,612 + 1.9
38,706 - 11924 mRNA_3556 0.11 0.1
38,767 + 11924 mRNA_3556 0.14 0.7
38,904 + 11924 mRNA_3556 0.19 1.6
39,199 - 11924 mRNA_3556 0.32 0.5
39,206 + 11924 mRNA_3556 0.32 1.1
39,447 - 11924 mRNA_3556 0.42 -0.1
39,471 - 11924 mRNA_3556 0.43 0.8
39,481 + 11924 mRNA_3556 0.44 0.3
39,517 + 11924 mRNA_3556 0.45 0.6
39,760 + 11924 mRNA_3556 0.55 0.2
39,781 - 11924 mRNA_3556 0.56 -1.0
39,865 - 11924 mRNA_3556 0.60 1.5
40,205 - 11924 mRNA_3556 0.74 0.4
40,298 + 11924 mRNA_3556 0.78 0.5
40,353 + 11924 mRNA_3556 0.80 -0.7
40,357 + 11924 mRNA_3556 0.81 -0.5
40,402 - 11924 mRNA_3556 0.82 -0.9
40,937 + -2.0
40,974 + -0.2
41,079 - -0.5
41,080 - 0.2
41,082 - 0.4
41,084 + -1.1
41,224 + 1.9
41,226 - 0.8
41,227 + 1.2
41,234 + 1.6
41,242 + 0.3
41,261 - 1.3
41,369 - 0.5
41,371 - 0.6
41,391 - 2.2
41,396 + -0.2
41,405 + 1.4
41,564 - 0.5
41,678 - -1.3
41,692 - 11925 mRNA_3557 0.10 -0.1
41,692 + 11925 mRNA_3557 0.10 0.4