Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3553

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30770 to 33816 11920 mRNA_3553: 11921 - Hypothetical Protein, at 34390 to 35973 11921 mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36108 to 36965 11922

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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33,563 + 1.1
33,870 + 1.3
33,881 + 2.4
33,881 + -0.1
33,897 + 1.2
33,904 + 0.4
34,025 - 1.9
34,032 + -0.1
34,307 + -0.2
34,332 + -1.4
34,357 - 0.8
34,398 + -1.8
34,500 + -0.3
34,728 - 11921 mRNA_3553 0.21 0.6
35,203 - 11921 mRNA_3553 0.51 1.5
35,655 + 11921 mRNA_3553 0.80 -0.9
35,754 - 11921 mRNA_3553 0.86 -1.6
35,766 + 11921 mRNA_3553 0.87 -0.7
36,292 - 11922 mRNA_3554 0.21 0.2
36,474 + 11922 mRNA_3554 0.43 0.3
36,656 + 11922 mRNA_3554 0.64 -1.8
36,808 + 11922 mRNA_3554 0.82 0.0
36,824 + 11922 mRNA_3554 0.83 0.1
36,913 + 1.3