Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3549

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22720 to 24408 11916 mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24932 to 26343 11917 mRNA_3550: 11918 - Hypothetical Protein, at 26790 to 27797 11918

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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24,097 - 11916 mRNA_3548 0.82 -0.4
24,671 + 0.5
24,714 - -0.3
25,093 + 11917 mRNA_3549 0.11 0.2
25,567 - 11917 mRNA_3549 0.45 0.0
25,884 - 11917 mRNA_3549 0.67 -1.4
25,976 - 11917 mRNA_3549 0.74 1.2
26,114 - 11917 mRNA_3549 0.84 -0.6
26,160 - 11917 mRNA_3549 0.87 0.8
26,308 - 3.2
26,468 + 0.2
26,603 - -2.3
26,610 - -0.1
26,709 + 4.0
26,733 - 1.3
26,751 - 0.4
26,877 + -0.0
26,885 - -1.3
26,891 - 11918 mRNA_3550 0.10 1.4
26,896 + 11918 mRNA_3550 0.11 0.1
26,902 - 11918 mRNA_3550 0.11 1.5
26,903 + 11918 mRNA_3550 0.11 2.0
26,903 + 11918 mRNA_3550 0.11 0.1
27,034 + 11918 mRNA_3550 0.24 -0.3
27,042 + 11918 mRNA_3550 0.25 -1.2
27,332 + 11918 mRNA_3550 0.54 -0.9