Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3548

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21031 to 22475 11915 mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22720 to 24408 11916 mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24932 to 26343 11917

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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22,511 + -2.9
22,529 + 2.5
22,652 + -0.3
22,662 - -2.4
22,665 - 0.6
22,670 - 0.9
22,680 - 0.7
22,912 - 11916 mRNA_3548 0.11 2.5
23,075 + 11916 mRNA_3548 0.21 -0.2
23,147 - 11916 mRNA_3548 0.25 1.9
23,159 - 11916 mRNA_3548 0.26 1.3
23,393 - 11916 mRNA_3548 0.40 -0.0
23,692 + 11916 mRNA_3548 0.58 1.1
23,827 - 11916 mRNA_3548 0.66 1.4
24,097 - 11916 mRNA_3548 0.82 -0.4
24,671 + 0.5
24,714 - -0.3
25,093 + 11917 mRNA_3549 0.11 0.2