Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3545

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3544: 11912 - K03506 POLE4 DNA polymerase epsilon subunit 4, at 15798 to 16734 11912 mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16929 to 18162 11913 mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18733 to 20553 11914

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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15,932 + 11912 mRNA_3544 0.14 -0.2
15,935 - 11912 mRNA_3544 0.15 -0.6
16,231 + 11912 mRNA_3544 0.46 0.9
16,474 + 11912 mRNA_3544 0.72 3.7
16,861 + -1.2
16,911 - -0.0
17,096 + 11913 mRNA_3545 0.14 1.6
17,239 - 11913 mRNA_3545 0.25 -1.6
17,276 - 11913 mRNA_3545 0.28 3.2
17,394 - 11913 mRNA_3545 0.38 0.8
17,669 + 11913 mRNA_3545 0.60 -0.8
17,941 - 11913 mRNA_3545 0.82 0.1
17,947 + 11913 mRNA_3545 0.82 1.1
17,955 + 11913 mRNA_3545 0.83 0.1
18,223 - 3.6
18,370 + -0.4
18,380 - 0.3
18,523 - 1.2
18,528 - -0.1
18,536 - 0.2
18,537 + -0.1
18,545 + 0.6
18,551 + 1.0
18,555 - -0.8
18,566 + -0.4
18,677 + 2.1
18,688 - -0.0
18,697 + 1.6
18,706 - -0.4
18,730 + 3.2
18,819 + 0.1
18,838 - 1.5
18,870 + 0.5
18,971 - 11914 mRNA_3546 0.13 -0.1
18,983 - 11914 mRNA_3546 0.14 2.2
19,025 + 11914 mRNA_3546 0.16 -0.7
19,141 + 11914 mRNA_3546 0.22 1.2