Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3532

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324086 to 325765 11899 mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325882 to 326936 11900 mRNA_3533: 11901 - K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7, at 327096 to 329991 11901

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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325,803 + 1.7
325,811 - 0.1
325,879 + 1.0
326,136 - 11900 mRNA_3532 0.24 0.9
326,152 - 11900 mRNA_3532 0.26 2.6
326,158 + 11900 mRNA_3532 0.26 0.2
326,167 - 11900 mRNA_3532 0.27 0.5
326,179 + 11900 mRNA_3532 0.28 0.1
326,192 - 11900 mRNA_3532 0.29 0.4
326,202 - 11900 mRNA_3532 0.30 0.6
326,249 - 11900 mRNA_3532 0.35 0.5
326,266 - 11900 mRNA_3532 0.36 0.8
326,266 + 11900 mRNA_3532 0.36 -1.1
326,274 - 11900 mRNA_3532 0.37 -0.4
326,290 + 11900 mRNA_3532 0.39 0.6
326,312 - 11900 mRNA_3532 0.41 0.4
326,326 + 11900 mRNA_3532 0.42 0.1
326,326 + 11900 mRNA_3532 0.42 2.2
326,326 - 11900 mRNA_3532 0.42 0.4
326,343 - 11900 mRNA_3532 0.44 0.1
326,347 + 11900 mRNA_3532 0.44 0.5
326,364 - 11900 mRNA_3532 0.46 0.0
326,365 - 11900 mRNA_3532 0.46 0.7
326,390 - 11900 mRNA_3532 0.48 0.1
326,391 + 11900 mRNA_3532 0.48 0.0
326,419 - 11900 mRNA_3532 0.51 -1.8
326,426 - 11900 mRNA_3532 0.52 0.4
326,531 - 11900 mRNA_3532 0.62 -0.1
326,545 + 11900 mRNA_3532 0.63 1.6
326,554 + 11900 mRNA_3532 0.64 -0.0
326,640 + 11900 mRNA_3532 0.72 1.6
326,682 - 11900 mRNA_3532 0.76 0.8
326,835 - 1.7
326,842 + 0.2
326,973 + 0.8
327,163 + -0.6
327,533 - 11901 mRNA_3533 0.15 1.3
327,606 - 11901 mRNA_3533 0.18 -0.1
327,901 - 11901 mRNA_3533 0.28 0.9