Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3523

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303792 to 304536 11890 mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304900 to 306087 11891 mRNA_3524: 11892 - Hypothetical Protein, at 306520 to 307367 11892

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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304,550 + 0.2
304,553 + 1.3
304,669 + 2.1
304,687 - -1.6
304,702 + 0.2
304,847 + 2.8
304,993 + 0.0
305,003 + -0.1
305,010 + -0.6
305,408 - 11891 mRNA_3523 0.43 -0.3
305,415 - 11891 mRNA_3523 0.43 2.2
305,701 - 11891 mRNA_3523 0.67 -0.5
305,831 - 11891 mRNA_3523 0.78 0.1
305,995 - 0.7
306,002 + -0.3
306,456 + -0.3
306,584 + 1.7
306,829 + 11892 mRNA_3524 0.36 -1.2
306,840 + 11892 mRNA_3524 0.38 -2.0
306,998 - 11892 mRNA_3524 0.56 2.8
307,043 + 11892 mRNA_3524 0.62 0.0
307,053 + 11892 mRNA_3524 0.63 0.1
307,084 + 11892 mRNA_3524 0.67 0.4