Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3515

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882 mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285817 to 288339 11883 mRNA_3516: 11884 - K01466 allB allantoinase, at 288576 to 290377 11884

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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285,167 - 11882 mRNA_3514 0.82 0.8
285,174 + 11882 mRNA_3514 0.83 -0.5
285,256 + 11882 mRNA_3514 0.89 0.5
285,285 + 1.1
285,288 - 0.4
285,294 + 0.2
285,326 - -0.4
285,382 + -0.9
285,399 + 0.3
285,434 - 1.4
285,502 - 0.3
285,502 - -0.3
285,510 + -0.5
285,510 + -0.1
285,593 - 0.7
285,609 + 2.1
285,626 - 1.3
285,743 - -0.2
286,196 - 11883 mRNA_3515 0.15 0.9
286,344 + 11883 mRNA_3515 0.21 -1.5
286,480 - 11883 mRNA_3515 0.26 -1.4
287,499 + 11883 mRNA_3515 0.67 -1.0
287,930 - 11883 mRNA_3515 0.84 -0.1
288,654 - -0.6
288,696 + -0.9
288,739 - -1.0
288,825 - 11884 mRNA_3516 0.14 0.5
289,121 - 11884 mRNA_3516 0.30 1.6
289,324 - 11884 mRNA_3516 0.42 -0.1