Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3514

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277755 to 283906 11881 mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882 mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285817 to 288339 11883

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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283,960 + 0.7
283,975 - -0.7
283,992 + -0.4
284,009 - 2.2
284,026 + -1.4
284,148 + -1.3
284,150 - 2.1
284,180 - 0.4
284,190 + -0.3
284,192 - -0.5
284,225 + 1.6
284,313 + 11882 mRNA_3514 0.15 -1.4
284,406 + 11882 mRNA_3514 0.23 -0.1
284,442 - 11882 mRNA_3514 0.25 -2.3
284,541 - 11882 mRNA_3514 0.33 2.8
284,564 - 11882 mRNA_3514 0.35 -0.2
284,567 + 11882 mRNA_3514 0.35 1.5
284,579 - 11882 mRNA_3514 0.36 0.8
284,580 + 11882 mRNA_3514 0.36 0.9
284,598 + 11882 mRNA_3514 0.38 -0.2
284,718 - 11882 mRNA_3514 0.47 -0.9
285,167 - 11882 mRNA_3514 0.82 0.8
285,174 + 11882 mRNA_3514 0.83 -0.5
285,256 + 11882 mRNA_3514 0.89 0.5
285,285 + 1.1
285,288 - 0.4
285,294 + 0.2
285,326 - -0.4
285,382 + -0.9
285,399 + 0.3
285,434 - 1.4
285,502 - 0.3
285,502 - -0.3
285,510 + -0.5
285,510 + -0.1
285,593 - 0.7
285,609 + 2.1
285,626 - 1.3
285,743 - -0.2
286,196 - 11883 mRNA_3515 0.15 0.9
286,344 + 11883 mRNA_3515 0.21 -1.5