Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3508

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260634 to 261961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262160 to 263731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263913 to 265913 11877

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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261,223 + 11875 mRNA_3507 0.44 0.8
261,476 + 11875 mRNA_3507 0.63 -0.6
261,525 - 11875 mRNA_3507 0.67 -3.9
261,664 + 11875 mRNA_3507 0.78 0.1
262,069 - -0.6
262,210 - 0.3
262,247 + -0.7
262,366 - 11876 mRNA_3508 0.13 -0.5
262,526 - 11876 mRNA_3508 0.23 -1.0
262,529 + 11876 mRNA_3508 0.23 2.0
262,544 + 11876 mRNA_3508 0.24 0.0
262,676 + 11876 mRNA_3508 0.33 1.4
263,057 - 11876 mRNA_3508 0.57 2.1
263,204 - 11876 mRNA_3508 0.66 1.4
263,539 + 11876 mRNA_3508 0.88 -0.4
263,561 + 11876 mRNA_3508 0.89 0.4
263,674 + 1.2
263,703 + -1.3
263,885 - -0.1
263,944 - 1.1
263,975 - -0.7
264,072 - 1.6
264,328 + 11877 mRNA_3509 0.21 1.3
264,688 + 11877 mRNA_3509 0.39 1.7