Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3504

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255381 to 257476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257806 to 259201 11873

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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254,450 - -0.3
254,542 + -0.1
254,630 - -0.7
254,645 + 0.9
254,893 - 2.2
255,001 - -0.1
255,039 + -0.5
255,048 - 1.3
255,169 - 0.5
255,209 - 0.1
255,328 - 0.4
255,332 - 0.9
255,348 - 0.3
255,461 - 1.4
255,677 - 11872 mRNA_3504 0.14 1.7
255,933 - 11872 mRNA_3504 0.26 0.2
256,227 - 11872 mRNA_3504 0.40 1.3
256,674 + 11872 mRNA_3504 0.62 0.2
256,969 - 11872 mRNA_3504 0.76 0.7
257,081 + 11872 mRNA_3504 0.81 -0.6
257,109 + 11872 mRNA_3504 0.82 1.5
257,126 + 11872 mRNA_3504 0.83 -1.1
257,387 - 0.1
257,395 + 1.2
257,407 + 0.2
257,548 + 1.5
257,553 - 1.1
257,555 + 1.5
257,577 - 2.9
257,579 + 2.7
257,699 - 1.2
258,002 - 11873 mRNA_3505 0.14 0.7
258,168 - 11873 mRNA_3505 0.26 -0.6
258,199 - 11873 mRNA_3505 0.28 0.4
258,295 - 11873 mRNA_3505 0.35 1.5