Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3496

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237336 to 238428 11862 mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238693 to 239237 11863 mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239425 to 240814 11864 mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241064 to 241942 11865

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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238,654 + 1.5
238,677 - 1.0
238,687 - 0.3
239,529 - -0.1
239,546 + 0.5
239,690 - 11864 mRNA_3496 0.19 0.6
239,832 + 11864 mRNA_3496 0.29 -0.1
239,832 + 11864 mRNA_3496 0.29 0.5
239,882 - 11864 mRNA_3496 0.33 0.2
240,235 + 11864 mRNA_3496 0.58 1.1
240,425 - 11864 mRNA_3496 0.72 0.0
240,526 - 11864 mRNA_3496 0.79 0.9
240,714 + 0.3
240,815 + 0.8
240,824 - -0.6
240,826 - 0.4
240,836 + 0.2
240,844 - 1.6
240,954 - 3.0
240,971 - 2.5
240,985 + 2.0
240,988 + 0.7
240,998 - 0.8
241,007 + -1.9
241,150 + 0.2
241,253 + 11865 mRNA_3497 0.22 -0.2
241,257 - 11865 mRNA_3497 0.22 0.7
241,281 - 11865 mRNA_3497 0.25 -1.5
241,299 - 11865 mRNA_3497 0.27 -0.4
241,435 - 11865 mRNA_3497 0.42 0.7
241,566 - 11865 mRNA_3497 0.57 -0.8
241,583 + 11865 mRNA_3497 0.59 -0.2
241,686 - 11865 mRNA_3497 0.71 1.1
241,724 - 11865 mRNA_3497 0.75 -0.4