Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3481

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3480: 11848 - K02180 BUB3 cell cycle arrest protein BUB3, at 209543 to 211018 11848 mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211233 to 213567 11849 mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213922 to 215101 11850

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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211,104 - -1.4
211,112 - -1.2
211,358 + 1.6
211,574 + 11849 mRNA_3481 0.15 0.3
211,802 - 11849 mRNA_3481 0.24 0.4
211,811 - 11849 mRNA_3481 0.25 1.3
211,835 + 11849 mRNA_3481 0.26 0.4
211,841 + 11849 mRNA_3481 0.26 -0.2
211,863 + 11849 mRNA_3481 0.27 -0.5
211,881 + 11849 mRNA_3481 0.28 0.0
212,279 - 11849 mRNA_3481 0.45 1.7
212,545 - 11849 mRNA_3481 0.56 -1.0
212,700 - 11849 mRNA_3481 0.63 2.1
212,842 - 11849 mRNA_3481 0.69 0.5
212,899 + 11849 mRNA_3481 0.71 0.5
212,905 + 11849 mRNA_3481 0.72 0.9
212,965 - 11849 mRNA_3481 0.74 3.5
212,974 - 11849 mRNA_3481 0.75 -2.0
212,982 + 11849 mRNA_3481 0.75 1.5
213,165 + 11849 mRNA_3481 0.83 -1.2
213,474 + 0.0
213,487 + 1.4
213,607 - 0.3
213,613 + 1.9
213,742 + -0.4
213,752 - 0.1
213,757 - 1.0
213,758 - 0.5
213,765 - -0.2
213,783 + 1.1
213,816 + -0.2
213,837 + -0.1
213,872 - 1.2
213,895 - 0.2
213,959 - -0.0
214,083 + 11850 mRNA_3482 0.14 0.0