Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3462

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829 mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156661 to 162747 11830 mRNA_3463: 11831 - Hypothetical Protein, at 163497 to 164279 11831

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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155,765 + 11829 mRNA_3461 0.80 0.1
155,847 - 11829 mRNA_3461 0.85 0.8
156,002 + 0.4
156,017 + 0.3
156,019 - -1.9
156,054 + 2.0
156,226 - -0.1
156,308 + 0.4
156,316 - 1.0
156,317 + 0.6
156,320 + 0.5
156,476 + -0.4
159,455 + 11830 mRNA_3462 0.46 0.8
160,790 + 11830 mRNA_3462 0.68 2.0
162,273 - 0.0
162,281 + 0.7
162,963 + 0.3
163,104 - 0.0
163,108 - 0.5
163,122 - -1.7
163,243 - -2.2
163,265 - 2.1
163,270 - 0.7
163,270 - -1.6
163,272 + 2.6
163,274 - 0.0
163,274 + 1.4
163,275 + 1.1
163,419 - -1.1
163,422 + -0.7
163,437 + 1.6
163,440 + 0.1
163,560 + 0.3
163,566 + -0.2
163,606 - 11831 mRNA_3463 0.14 0.1
163,714 - 11831 mRNA_3463 0.28 -0.4
163,725 - 11831 mRNA_3463 0.29 1.4