Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3453

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3452: 11820 - HMMPfam-Protein of unknown function (DUF2454)-PF10521,SUPERFAMILY--SSF48371, at 136126 to 138036 11820 mRNA_3453: 11821 - KOG2959 Transcriptional regulator, at 138350 to 139548 11821 mRNA_3454: 11822 - SUPERFAMILY--SSF52047, at 139645 to 140934 11822

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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138,157 + 0.4
138,191 + 0.6
138,282 + 0.6
138,763 - 11821 mRNA_3453 0.34 -1.7
139,314 + 11821 mRNA_3453 0.80 1.4
139,360 + 11821 mRNA_3453 0.84 -0.5
139,470 - 3.3
139,508 + -0.3
139,743 + 0.6
139,775 - 11822 mRNA_3454 0.10 -1.0
140,295 + 11822 mRNA_3454 0.50 0.9
140,352 + 11822 mRNA_3454 0.55 -0.5
140,366 - 11822 mRNA_3454 0.56 1.7
140,397 + 11822 mRNA_3454 0.58 1.2
140,458 + 11822 mRNA_3454 0.63 -0.4
140,461 - 11822 mRNA_3454 0.63 0.6
140,461 - 11822 mRNA_3454 0.63 0.7
140,531 + 11822 mRNA_3454 0.69 0.1