Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3440

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110002 to 112287 11808 mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112497 to 113807 11809

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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109,237 - 0.5
109,244 - -0.0
109,394 + 0.1
109,465 + 0.1
109,510 - 1.0
109,537 - 2.4
109,581 - -0.9
109,685 + 1.3
109,688 + 0.5
109,690 - 1.7
109,797 - 0.5
109,917 + 1.7
109,968 - -1.4
109,997 + -0.2
109,997 + 0.5
110,029 + 0.9
110,099 - 0.5
110,237 - 11808 mRNA_3440 0.10 1.3
110,407 + 11808 mRNA_3440 0.18 0.2
110,413 + 11808 mRNA_3440 0.18 0.0
110,529 + 11808 mRNA_3440 0.23 -0.3
110,662 - 11808 mRNA_3440 0.29 0.4
110,809 + 11808 mRNA_3440 0.35 2.8
111,144 + 11808 mRNA_3440 0.50 -0.3
111,238 + 11808 mRNA_3440 0.54 1.0
111,549 + 11808 mRNA_3440 0.68 -0.8
111,565 + 11808 mRNA_3440 0.68 -1.3
111,650 + 11808 mRNA_3440 0.72 1.4
111,726 + 11808 mRNA_3440 0.75 -0.8
111,956 - 11808 mRNA_3440 0.85 -0.8
111,964 + 11808 mRNA_3440 0.86 -0.1
112,142 + -1.1
112,145 + 0.8
112,151 - 0.2
112,268 - -0.2
112,278 - 3.1
112,406 - -0.2
112,409 + 2.0
112,416 - -1.1
112,429 + 0.6
112,546 - -0.3
112,548 - -2.0
112,559 - -0.6
112,567 - 2.4
112,823 - 11809 mRNA_3441 0.25 1.6
112,839 + 11809 mRNA_3441 0.26 1.5
112,856 + 11809 mRNA_3441 0.27 0.4
112,878 + 11809 mRNA_3441 0.29 -1.0
112,884 + 11809 mRNA_3441 0.30 -0.3
113,125 - 11809 mRNA_3441 0.48 -0.0
113,129 + 11809 mRNA_3441 0.48 1.3
113,133 - 11809 mRNA_3441 0.49 -1.7
113,178 - 11809 mRNA_3441 0.52 -2.2