Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3436

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3435: 11803 - K12614 DDX6, RCK, DHH1 ATP-dependent RNA helicase DDX6/DHH1, at 91986 to 94017 11803 mRNA_3436: 11804 - HMMPfam-Oligosaccharyltransferase subunit Ribophorin II-PF05817, at 94407 to 97285 11804 mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97433 to 99630 11805

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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93,718 - 11803 mRNA_3435 0.85 -0.3
93,863 + 0.3
94,022 + -1.3
94,207 - 1.5
94,477 - 0.0
94,553 + 0.4
94,683 + 0.2
95,332 + 11804 mRNA_3436 0.32 -2.1
95,465 - 11804 mRNA_3436 0.37 2.3
95,465 - 11804 mRNA_3436 0.37 1.2
95,618 + 11804 mRNA_3436 0.42 0.2
95,727 + 11804 mRNA_3436 0.46 0.7
95,904 - 11804 mRNA_3436 0.52 -1.0
95,911 + 11804 mRNA_3436 0.52 0.6
95,911 + 11804 mRNA_3436 0.52 0.3
95,968 - 11804 mRNA_3436 0.54 -0.0
96,024 + 11804 mRNA_3436 0.56 0.1
96,163 - 11804 mRNA_3436 0.61 0.1
96,172 + 11804 mRNA_3436 0.61 1.6
96,495 - 11804 mRNA_3436 0.73 -0.4
96,623 - 11804 mRNA_3436 0.77 1.5
96,894 - 11804 mRNA_3436 0.86 -0.1
96,915 - 11804 mRNA_3436 0.87 -1.6
96,930 + 11804 mRNA_3436 0.88 0.0
97,002 - -2.5
97,080 - 0.2
97,204 + 1.4
97,358 + 0.6
97,388 + 0.1
97,412 - 0.3