Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3432

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3432: 11800 - BLAST RecF/RecN/SMC protein [Sistotremastrum niveocremeum H..., at 86676 to 87359 11800 mRNA_3433: 11801 - HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479, at 88231 to 90113 11801

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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85,677 - -0.2
85,680 - -0.4
85,713 + -0.0
85,728 + 0.4
85,756 - 1.5
85,937 - 0.9
85,979 - 1.3
85,999 - -0.1
86,004 + 2.3
86,133 + 0.5
86,253 + -0.3
86,256 - -0.4
86,280 + 0.1
86,285 - 1.6
86,479 - 0.2
86,548 + 1.7
86,557 - 2.6
86,581 - 0.5
86,629 + 0.5
86,773 - 11800 mRNA_3432 0.14 -0.5
86,874 + 11800 mRNA_3432 0.29 -0.2
87,271 + 11800 mRNA_3432 0.87 0.8
87,335 + 0.1
87,389 - 0.2
87,422 + 0.3
87,422 - -0.4
87,425 + -1.0
87,443 - 0.9
87,447 + 1.9
87,447 + -0.0
87,488 - 1.6
87,514 - -0.4
87,526 + 0.2
87,537 - 0.4
87,549 + -0.6
87,564 - -1.0
87,566 - 0.3
87,693 + 0.3
87,765 + 0.7
87,781 - -0.1
87,853 - 2.3
87,858 - -2.4
87,871 - -0.6
87,872 + 0.1
87,909 - 0.5
88,004 + 0.9
88,016 + 0.8
88,020 + -0.3
88,070 + -0.1
88,115 + -0.1
88,120 - 0.9
88,279 - 0.8
88,290 + 2.0