Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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584,873 - 11767 mRNA_3399 0.75 1.6
584,957 - 11767 mRNA_3399 0.78 -0.1
585,004 - 11767 mRNA_3399 0.79 -0.1
585,100 + 11767 mRNA_3399 0.82 -0.0
585,100 - 11767 mRNA_3399 0.82 -0.4
585,220 + 11767 mRNA_3399 0.85 0.4
585,303 - 11767 mRNA_3399 0.88 0.3
585,320 + 11767 mRNA_3399 0.88 1.5
585,362 + 11767 mRNA_3399 0.90 2.2
585,451 + 1.0
585,474 - -2.5
585,514 - 0.9
585,613 - 1.3
585,629 + 0.6
585,638 + 1.5
585,670 + 0.7
585,767 + 0.7
585,777 - 0.4
585,792 - 0.5
585,803 + -1.5
586,039 - 11768 mRNA_3400 0.12 2.0
587,250 - 11768 mRNA_3400 0.84 0.0
587,294 + 11768 mRNA_3400 0.86 0.4
587,300 - 11768 mRNA_3400 0.87 0.1
587,357 - -0.7
587,397 - -0.1
587,412 + 0.8
587,414 + -2.7
587,414 + -0.5
587,419 + 1.1
587,461 - -0.9
587,466 - -0.5
587,473 - -0.8
587,490 - -1.6
587,535 + 1.4
587,535 - 1.0
587,535 + 2.2
587,551 - -0.1
587,551 + -0.3
587,562 + 1.0
587,564 - 0.2
587,564 - 0.7
587,565 - 0.1
587,569 - 3.4
587,570 + -1.3
587,574 - -0.5
587,581 - 1.3
587,581 - 0.5
587,583 - 0.0
587,593 - 0.8
587,595 - 1.3
587,595 - -0.3
587,600 - 1.5