Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3398

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457 11765 mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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579,878 - 11765 mRNA_3397 0.51 1.3
579,923 - 11765 mRNA_3397 0.55 2.1
579,923 + 11765 mRNA_3397 0.55 1.8
579,924 - 11765 mRNA_3397 0.55 -0.3
579,980 + 11765 mRNA_3397 0.59 0.7
580,068 + 11765 mRNA_3397 0.67 1.2
580,071 - 11765 mRNA_3397 0.67 1.4
580,212 - 11765 mRNA_3397 0.79 0.7
580,227 - 11765 mRNA_3397 0.80 -0.6
580,388 - 1.9
580,725 + 2.4
581,125 + 11766 mRNA_3398 0.28 -0.0
581,187 - 11766 mRNA_3398 0.34 2.7
581,252 + 11766 mRNA_3398 0.41 -1.4
581,276 - 11766 mRNA_3398 0.43 1.6
581,276 - 11766 mRNA_3398 0.43 0.6
581,289 + 11766 mRNA_3398 0.44 0.9
581,312 + 11766 mRNA_3398 0.47 -0.9
581,400 + 11766 mRNA_3398 0.56 0.9
581,407 + 11766 mRNA_3398 0.57 0.8
581,422 + 11766 mRNA_3398 0.58 0.5
581,435 - 11766 mRNA_3398 0.59 -1.6
581,524 + 11766 mRNA_3398 0.69 -0.7
581,554 - 11766 mRNA_3398 0.72 1.4
581,570 + 11766 mRNA_3398 0.73 0.5
581,721 + 11766 mRNA_3398 0.89 2.8
581,729 + 11766 mRNA_3398 0.89 2.3
581,730 + 11766 mRNA_3398 0.90 0.1
581,851 - -1.1
581,862 + -1.6
581,882 - 0.7
581,889 - -0.9
581,900 + 1.5
581,912 - 0.6
581,956 + 0.4
581,978 + -1.3
581,983 + -1.6
581,985 - 1.4
581,989 - 0.2
581,993 + 1.1
581,994 - 0.1
582,001 + 0.9
582,007 - 1.5
582,014 + 0.6
582,023 - 0.1
582,026 + 0.3
582,032 + -0.1
582,037 - 0.2
582,039 - 0.9
582,113 - -0.7
582,310 + 0.2
582,311 + 0.8
582,312 + 1.8
582,580 + 2.2
582,721 + 11767 mRNA_3399 0.13 0.8
582,753 - 11767 mRNA_3399 0.13 2.4