Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3392

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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569,180 + 11759 mRNA_3391 0.43 1.9
569,370 + 11759 mRNA_3391 0.63 0.2
569,477 + 11759 mRNA_3391 0.74 0.8
569,477 - 11759 mRNA_3391 0.74 -0.7
569,618 + 11759 mRNA_3391 0.88 2.4
569,639 - 0.6
569,780 - -1.7
569,781 + 1.3
569,791 + 0.2
569,795 - 1.6
569,799 - 2.5
569,803 + -0.1
569,814 - 2.0
569,860 - 0.1
569,864 + 0.7
569,877 + 0.1
569,987 - -1.3
570,007 - -0.5
570,108 - 1.4
570,281 - 11760 mRNA_3392 0.23 -1.8
570,566 - 11760 mRNA_3392 0.57 0.7
570,838 + 11760 mRNA_3392 0.88 -0.5
570,845 + 11760 mRNA_3392 0.89 -0.7
570,873 - 1.0
570,874 + 0.1
570,885 - -0.0
570,982 - 0.2
570,990 - -0.1
570,990 - -0.8
570,995 + -0.9
571,109 - -0.8
571,369 + -1.5
571,413 + 1.0
571,417 - -0.4
571,442 - -1.7
571,443 + 0.2
571,601 - 2.1
571,730 + 11761 mRNA_3393 0.13 0.6
571,901 + 11761 mRNA_3393 0.20 -1.8