Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3383

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3382: 11750 - HMMPfam-Vaculolar membrane protein-PF12400,PRINTS-Proline rich extensin signature-PR01217, at 546099 to 548480 11750 mRNA_3383: 11751 - HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383, at 548745 to 549848 11751

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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547,759 - 11750 mRNA_3382 0.70 -0.2
548,294 - 0.5
548,607 - 0.2
548,632 - 0.3
548,761 + 0.1
548,773 + 1.6
549,240 + 11751 mRNA_3383 0.45 0.6
549,749 + -0.3
549,785 - -0.5
549,808 - 2.7
550,202 + 0.2
550,220 + 0.0
550,686 - -1.4
550,802 + 1.7
550,805 + -0.4
550,806 - 0.2
550,813 + 0.5
550,824 - -1.7
550,834 + -0.3
550,839 + -1.2