Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3380

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3379: 11747 - Hypothetical Protein, at 537005 to 537944 11747 mRNA_3380: 11748 - KOG1650 Predicted K+/H+-antiporter, at 538274 to 541877 11748 mRNA_3381: 11749 - K06027 NSF vesicle-fusing ATPase, at 542498 to 545831 11749

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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537,282 + 11747 mRNA_3379 0.29 -1.2
537,427 + 11747 mRNA_3379 0.45 0.3
537,427 + 11747 mRNA_3379 0.45 -0.7
537,427 + 11747 mRNA_3379 0.45 2.0
537,433 + 11747 mRNA_3379 0.46 -0.1
537,522 - 11747 mRNA_3379 0.55 0.2
537,557 - 11747 mRNA_3379 0.59 -0.8
537,614 + 11747 mRNA_3379 0.65 0.0
537,844 - 11747 mRNA_3379 0.89 1.6
537,850 + 11747 mRNA_3379 0.90 -0.2
537,960 + -0.2
538,116 - 2.7
538,127 + 0.1
538,240 + -0.8
538,441 - 1.3
538,573 - 1.6
538,704 + 11748 mRNA_3380 0.12 1.0
538,706 + 11748 mRNA_3380 0.12 -0.1
538,715 + 11748 mRNA_3380 0.12 1.0
538,726 - 11748 mRNA_3380 0.13 -0.5
538,835 + 11748 mRNA_3380 0.16 0.1
539,084 - 11748 mRNA_3380 0.22 -0.5
539,133 - 11748 mRNA_3380 0.24 2.6
539,154 - 11748 mRNA_3380 0.24 -0.4
539,215 + 11748 mRNA_3380 0.26 2.8
539,250 + 11748 mRNA_3380 0.27 -0.2
539,296 - 11748 mRNA_3380 0.28 -1.6
539,302 + 11748 mRNA_3380 0.29 0.1
539,354 + 11748 mRNA_3380 0.30 1.0
539,561 + 11748 mRNA_3380 0.36 0.7
539,700 + 11748 mRNA_3380 0.40 0.8
539,700 + 11748 mRNA_3380 0.40 -0.5
539,701 + 11748 mRNA_3380 0.40 -0.7
539,702 - 11748 mRNA_3380 0.40 0.7
539,721 + 11748 mRNA_3380 0.40 1.2
539,737 - 11748 mRNA_3380 0.41 0.2
539,737 - 11748 mRNA_3380 0.41 0.3
539,777 + 11748 mRNA_3380 0.42 1.1
539,864 + 11748 mRNA_3380 0.44 -1.0
539,918 - 11748 mRNA_3380 0.46 1.9
540,199 - 11748 mRNA_3380 0.53 1.2
540,341 + 11748 mRNA_3380 0.57 0.5
540,387 + 11748 mRNA_3380 0.59 0.2
540,611 + 11748 mRNA_3380 0.65 -0.4
540,689 + 11748 mRNA_3380 0.67 -1.1
541,136 + 11748 mRNA_3380 0.79 0.8
541,477 + 11748 mRNA_3380 0.89 -0.4
541,570 - -0.5
541,594 - -1.9
541,632 + -1.9
541,744 - 0.9
541,902 + 0.9
542,042 - 0.6
542,052 + 0.3
542,063 + 0.6
542,068 + -1.3
542,072 + 3.7
542,079 + -1.3
542,082 - -0.4
542,089 + -0.2
542,221 - 0.7
542,224 + -0.0
542,372 + 1.8
542,466 - 0.1
542,505 - 2.4