Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3362

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494941 to 495602 11729 mRNA_3362: 11730 - BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ..., at 495992 to 499759 11730 mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499965 to 500841 11731

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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495,112 - 11729 mRNA_3361 0.26 -0.1
495,158 + 11729 mRNA_3361 0.33 0.1
495,239 - 11729 mRNA_3361 0.45 0.9
495,284 + 11729 mRNA_3361 0.52 -0.5
495,868 - -0.9
495,894 - -1.0
495,999 + 1.7
496,002 - 0.1
496,156 + -0.7
496,156 - 2.0
496,185 - 0.9
496,295 - 0.2
496,487 - 11730 mRNA_3362 0.13 -0.2
496,487 - 11730 mRNA_3362 0.13 0.4
496,605 - 11730 mRNA_3362 0.16 0.2
496,653 + 11730 mRNA_3362 0.18 1.2
496,767 + 11730 mRNA_3362 0.21 1.4
496,820 - 11730 mRNA_3362 0.22 -2.2
496,902 + 11730 mRNA_3362 0.24 -3.1
497,014 + 11730 mRNA_3362 0.27 1.8
497,440 + 11730 mRNA_3362 0.38 1.7
497,452 - 11730 mRNA_3362 0.39 0.3
497,549 - 11730 mRNA_3362 0.41 1.4
497,621 + 11730 mRNA_3362 0.43 0.1
497,682 - 11730 mRNA_3362 0.45 -1.5
497,937 + 11730 mRNA_3362 0.52 0.3
497,964 + 11730 mRNA_3362 0.52 1.3
498,092 + 11730 mRNA_3362 0.56 1.3
498,256 + 11730 mRNA_3362 0.60 -0.3
498,355 - 11730 mRNA_3362 0.63 0.8
498,545 + 11730 mRNA_3362 0.68 0.0
498,561 + 11730 mRNA_3362 0.68 -0.7
498,673 + 11730 mRNA_3362 0.71 -1.0
498,847 - 11730 mRNA_3362 0.76 0.8
498,915 + 11730 mRNA_3362 0.78 2.2
498,943 + 11730 mRNA_3362 0.78 -0.1
499,063 + 11730 mRNA_3362 0.82 -0.1
499,066 - 11730 mRNA_3362 0.82 0.3
499,066 - 11730 mRNA_3362 0.82 1.2
499,125 - 11730 mRNA_3362 0.83 1.7
499,249 + 11730 mRNA_3362 0.86 -0.8
499,266 + 11730 mRNA_3362 0.87 1.1
499,435 + 1.6
499,459 - 1.5
499,554 - 0.2
499,557 + 0.5
499,700 - 2.0
499,701 - -0.0
499,708 + -1.4
499,719 - 0.1
499,860 - 1.0
499,872 + 0.1
499,912 - -0.6
499,954 - 0.3
500,007 - 0.3
500,014 - 0.7