Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3352

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3351: 11719 - K12196 VPS4 vacuolar protein-sorting-associated protein 4, at 461320 to 463748 11719 mRNA_3352: 11720 - K06699 PSME4 proteasome activator subunit 4, at 464153 to 471579 11720 mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471874 to 478185 11721

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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463,440 - 11719 mRNA_3351 0.87 -1.0
463,801 + 1.7
463,890 - -1.3
463,919 - 0.6
463,953 + 1.9
464,075 - -1.0
464,075 - -1.5
464,083 - 0.0
464,083 - -0.9
464,085 + 0.7
464,089 - 0.5
464,118 + 2.9
464,143 + 0.4
464,221 + -0.1
464,224 - 1.6
464,232 - 1.7
464,237 - 1.1
464,271 + 0.6
464,352 - 0.7
464,352 - -1.5
464,358 + 0.0
464,373 - -0.5
464,388 + -0.9
464,394 + -0.0
464,395 - -1.9
464,517 - 0.2
464,519 + 0.0
464,651 + 0.0
464,791 + 1.3
464,797 + 0.7
464,814 - 0.8
465,065 + 11720 mRNA_3352 0.12 -0.5
465,261 + 11720 mRNA_3352 0.15 0.1
465,262 - 11720 mRNA_3352 0.15 0.9
465,369 + 11720 mRNA_3352 0.16 -2.1
465,431 + 11720 mRNA_3352 0.17 0.9
465,468 - 11720 mRNA_3352 0.18 -1.0
465,524 + 11720 mRNA_3352 0.18 -2.0
465,638 - 11720 mRNA_3352 0.20 1.0
465,781 + 11720 mRNA_3352 0.22 -0.4
465,884 + 11720 mRNA_3352 0.23 1.2
465,966 + 11720 mRNA_3352 0.24 -0.4
466,085 + 11720 mRNA_3352 0.26 2.9
466,290 - 11720 mRNA_3352 0.29 1.0
466,374 + 11720 mRNA_3352 0.30 -1.0
466,537 - 11720 mRNA_3352 0.32 -0.3
466,543 - 11720 mRNA_3352 0.32 -0.0
466,657 - 11720 mRNA_3352 0.34 0.7
466,659 + 11720 mRNA_3352 0.34 -0.0
466,661 + 11720 mRNA_3352 0.34 1.1
466,700 + 11720 mRNA_3352 0.34 0.9
466,751 - 11720 mRNA_3352 0.35 -0.5
466,766 + 11720 mRNA_3352 0.35 -0.3
466,788 - 11720 mRNA_3352 0.35 2.1
466,880 - 11720 mRNA_3352 0.37 0.8
466,888 - 11720 mRNA_3352 0.37 -0.6
466,909 - 11720 mRNA_3352 0.37 0.2
466,970 + 11720 mRNA_3352 0.38 -0.4
466,980 - 11720 mRNA_3352 0.38 -0.7
467,006 + 11720 mRNA_3352 0.38 1.1
467,018 + 11720 mRNA_3352 0.39 0.4
467,054 + 11720 mRNA_3352 0.39 0.3
467,120 + 11720 mRNA_3352 0.40 0.4
467,127 + 11720 mRNA_3352 0.40 -0.0
467,192 + 11720 mRNA_3352 0.41 0.8
467,256 + 11720 mRNA_3352 0.42 -0.0
467,352 + 11720 mRNA_3352 0.43 1.5
467,352 + 11720 mRNA_3352 0.43 1.4
467,372 + 11720 mRNA_3352 0.43 -0.2
467,504 + 11720 mRNA_3352 0.45 2.5
467,522 + 11720 mRNA_3352 0.45 0.2
467,527 - 11720 mRNA_3352 0.45 0.5
467,529 + 11720 mRNA_3352 0.45 -1.9
467,534 + 11720 mRNA_3352 0.46 0.0
468,081 + 11720 mRNA_3352 0.53 1.8
468,084 - 11720 mRNA_3352 0.53 0.9
468,144 + 11720 mRNA_3352 0.54 -0.7
468,195 - 11720 mRNA_3352 0.54 -0.0
468,196 + 11720 mRNA_3352 0.54 0.4
468,425 - 11720 mRNA_3352 0.58 0.0
468,442 + 11720 mRNA_3352 0.58 -0.5
468,575 + 11720 mRNA_3352 0.60 -0.6
468,602 - 11720 mRNA_3352 0.60 0.3
468,646 - 11720 mRNA_3352 0.60 3.4
468,670 - 11720 mRNA_3352 0.61 0.6
468,719 + 11720 mRNA_3352 0.61 0.4
468,768 - 11720 mRNA_3352 0.62 1.6
468,769 + 11720 mRNA_3352 0.62 0.3
468,770 + 11720 mRNA_3352 0.62 -1.6
468,785 - 11720 mRNA_3352 0.62 0.5
468,897 - 11720 mRNA_3352 0.64 -1.4
469,026 + 11720 mRNA_3352 0.66 -0.1
469,027 - 11720 mRNA_3352 0.66 0.5
469,036 + 11720 mRNA_3352 0.66 0.5
469,086 + 11720 mRNA_3352 0.66 1.5
469,101 + 11720 mRNA_3352 0.67 2.3
469,268 - 11720 mRNA_3352 0.69 1.5
469,401 + 11720 mRNA_3352 0.71 -0.7
469,457 + 11720 mRNA_3352 0.71 0.8
469,572 + 11720 mRNA_3352 0.73 0.8
469,611 - 11720 mRNA_3352 0.73 0.1
469,680 - 11720 mRNA_3352 0.74 -1.2
469,701 + 11720 mRNA_3352 0.75 2.7
469,733 + 11720 mRNA_3352 0.75 1.7
469,735 - 11720 mRNA_3352 0.75 1.1
469,738 - 11720 mRNA_3352 0.75 0.5
469,741 + 11720 mRNA_3352 0.75 1.0
469,748 - 11720 mRNA_3352 0.75 0.3
469,843 - 11720 mRNA_3352 0.77 -2.2
469,854 - 11720 mRNA_3352 0.77 1.3
469,929 + 11720 mRNA_3352 0.78 0.4
470,038 + 11720 mRNA_3352 0.79 1.9
470,080 - 11720 mRNA_3352 0.80 -0.4
470,126 - 11720 mRNA_3352 0.80 2.7
470,130 - 11720 mRNA_3352 0.80 0.7
470,160 - 11720 mRNA_3352 0.81 0.9
470,161 + 11720 mRNA_3352 0.81 -0.1
470,161 + 11720 mRNA_3352 0.81 0.3
470,164 - 11720 mRNA_3352 0.81 -2.1
470,285 - 11720 mRNA_3352 0.83 -0.1
470,300 - 11720 mRNA_3352 0.83 1.0
470,313 - 11720 mRNA_3352 0.83 -0.0
470,425 - 11720 mRNA_3352 0.84 0.1
470,452 - 11720 mRNA_3352 0.85 1.0
470,455 + 11720 mRNA_3352 0.85 0.2
470,488 + 11720 mRNA_3352 0.85 0.4
470,673 - 11720 mRNA_3352 0.88 0.3
470,694 + 11720 mRNA_3352 0.88 0.0
470,734 + 11720 mRNA_3352 0.89 0.5
470,758 - 11720 mRNA_3352 0.89 -0.3
471,049 + -0.2
471,049 + 1.9
471,346 + 0.7
471,462 + 0.3
471,477 + 1.8
471,570 - 0.4
471,605 + 1.6
471,625 - 2.5
471,747 - 0.4
472,059 + 0.1