Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3344

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433717 to 434732 11711 mRNA_3344: 11712 - Hypothetical Protein, at 435281 to 435909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436771 to 439819 11713

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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434,344 - 11711 mRNA_3343 0.62 -0.1
434,349 - 11711 mRNA_3343 0.62 0.8
434,435 + 11711 mRNA_3343 0.71 0.2
434,470 - 11711 mRNA_3343 0.74 -2.0
434,627 + 11711 mRNA_3343 0.90 0.9
434,627 + 11711 mRNA_3343 0.90 1.0
434,637 + 0.2
434,637 + -0.8
434,642 - 1.7
434,653 + -0.5
434,758 - 2.7
434,771 - -0.2
434,771 - 1.2
434,780 - 0.1
434,788 - -0.5
434,788 + -0.0
434,793 - 2.7
434,793 - -0.3
434,794 - 3.5
434,795 - 1.4
434,797 - 0.7
434,798 - 2.1
434,801 + -0.2
434,806 - 0.3
434,806 - 0.6
434,808 - 1.3
434,810 + 1.6
434,810 - 0.1
434,810 - -1.0
434,811 - 0.2
434,811 - 2.4
434,811 - 1.3
434,814 + 1.2
434,818 - -1.4
434,818 + 0.1
434,820 - -0.8
434,825 + -2.5
434,826 + 0.4
434,835 - -1.2
434,836 + 2.5
434,838 + 0.7
434,839 - -1.0
434,846 + 0.5
434,847 + 2.0
434,851 + 2.5
434,859 + 0.7
434,861 + 0.1
434,862 - 0.6
434,864 + 1.8
434,864 + -1.6
434,901 - -0.9
434,915 - 1.3
434,932 - 0.6
434,933 + 0.1
434,936 + 0.9
434,965 - 0.3
434,968 - 0.1
434,972 - 0.1
434,980 + 0.7
434,982 + 1.2
434,985 - 0.5
434,989 + 0.1
434,994 - -1.0
435,007 - -0.4
435,007 + 0.1
435,008 - 1.4
435,009 + -2.1
435,009 - 0.4
435,014 - 0.7
435,017 - 1.0
435,021 - 0.0
435,022 + 1.0
435,022 + 1.8
435,022 + 2.4
435,022 + 1.2
435,031 - 0.8
435,037 + -1.0
435,039 - 0.7
435,041 - 0.9
435,043 + 0.6
435,044 + 2.3
435,055 + 0.2
435,056 - -0.5
435,057 + -0.3
435,062 - -0.3
435,062 - 0.1
435,067 - 1.0
435,068 - 1.0
435,072 - 0.7
435,077 - -1.4
435,084 - -0.5
435,089 + -1.8
435,092 - 0.3
435,101 + 0.3
435,105 + -0.0
435,184 + 1.1
435,188 - 2.1
435,214 + -0.4
435,218 + 1.8
435,242 + 0.8
435,254 - 1.7
435,270 + 0.0
435,366 - 11712 mRNA_3344 0.14 -0.5
435,367 + 11712 mRNA_3344 0.14 1.5
435,386 - 11712 mRNA_3344 0.17 2.8
435,413 + 11712 mRNA_3344 0.21 1.1
435,415 - 11712 mRNA_3344 0.21 0.6
435,425 + 11712 mRNA_3344 0.23 0.7
435,444 + 11712 mRNA_3344 0.26 0.6
435,480 - 11712 mRNA_3344 0.32 1.3
435,551 - 11712 mRNA_3344 0.43 -1.4
435,558 + 11712 mRNA_3344 0.44 -0.0
435,687 + 11712 mRNA_3344 0.65 0.1
435,708 - 11712 mRNA_3344 0.68 1.1
435,942 - 0.1
436,000 + 0.2
436,006 - 1.2
436,024 - 1.4
436,030 + 0.2
436,100 - 1.7
436,112 + 2.1
436,114 - 2.3
436,130 - 0.3
436,132 - 0.7
436,179 + 0.4
436,179 - -0.1
436,180 + -0.1
436,202 - 0.1
436,212 - 0.8
436,229 - 0.0
436,235 + 1.4
436,238 + -0.3
436,240 + -0.8
436,240 + -0.1
436,242 - 2.5
436,242 - 0.8
436,242 - -0.8
436,250 + -2.4
436,250 + 0.3
436,272 + 0.3
436,275 + 1.7
436,278 + -0.0
436,288 + -0.1
436,297 - -0.4
436,303 + 1.2
436,320 + 0.4
436,321 - -0.1
436,325 + 0.2
436,329 + 0.0
436,332 - 1.8
436,332 - 0.2
436,339 - 0.3
436,342 - 1.9
436,356 - 0.6
436,358 + 0.6
436,457 - 0.8
436,458 - 0.2
436,460 + 2.5
436,471 - -0.3
436,476 - 0.2
436,494 + 0.4
436,505 + 2.9
436,508 - 1.9
436,523 + 1.6
436,526 + 0.7
436,530 - -0.5
436,532 + 3.6
436,557 + -1.0
436,674 + 0.1
436,689 - 0.1
436,787 - 2.3
436,816 + -0.1
436,839 + 0.6
436,841 + 0.3
436,875 + 1.9