Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3339

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3338: 11706 - KOG3525 Subtilisin-like proprotein convertase, at 419190 to 423102 11706 mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423436 to 425345 11707 mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425589 to 428080 11708

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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422,600 + 11706 mRNA_3338 0.87 0.2
422,794 - 0.3
422,882 - 0.8
422,914 + 0.5
422,972 - -0.7
422,984 - -0.1
423,151 + 2.0
423,178 - -1.4
423,186 + -0.0
423,189 - -0.7
423,415 - -0.6
423,445 - 0.5
423,571 - -0.0
423,591 + 1.5
423,719 + 11707 mRNA_3339 0.15 1.7
423,744 + 11707 mRNA_3339 0.16 0.4
424,043 - 11707 mRNA_3339 0.32 1.0
424,242 + 11707 mRNA_3339 0.42 2.3
424,400 - 11707 mRNA_3339 0.50 0.2
424,798 + 11707 mRNA_3339 0.71 0.3
424,935 - 11707 mRNA_3339 0.78 -0.6
424,944 - 11707 mRNA_3339 0.79 -0.6
424,966 - 11707 mRNA_3339 0.80 -1.4
425,077 + 11707 mRNA_3339 0.86 1.9
425,121 + 11707 mRNA_3339 0.88 -1.7
425,372 + -1.6
425,378 - -0.8
425,511 + 2.2
425,522 - 0.4
425,565 + 0.7
425,658 - 1.3
425,672 - 0.7
425,675 + -1.4
425,699 + 1.3
425,871 - 11708 mRNA_3340 0.11 0.8
425,935 - 11708 mRNA_3340 0.14 0.3
426,075 - 11708 mRNA_3340 0.20 0.0