Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3323

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3322: 11690 - HMMPfam-Ribosomal RNA-processing protein 7 (RRP7)-PF12923, at 393973 to 395198 11690 mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395494 to 396830 11691 mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397238 to 398541 11692

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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394,946 + 11690 mRNA_3322 0.79 1.5
394,988 + 11690 mRNA_3322 0.83 0.9
395,114 - -0.7
395,139 + -0.2
395,156 + 2.5
395,247 - 1.4
395,254 - 0.5
395,254 - 0.4
395,259 + 0.7
395,263 + -0.7
395,266 - 0.3
395,268 + 1.1
395,275 + -0.2
395,284 - -0.0
395,286 + 0.6
395,299 - 0.2
395,306 + -0.5
395,307 - -0.3
395,321 - -0.5
395,358 + -0.8
395,363 + 0.3
395,367 - -1.2
395,373 + -0.9
395,379 + 1.2
395,388 - 1.0
395,389 + 0.9
395,393 + -0.1
395,395 + 0.6
395,396 - 0.8
395,401 + 0.6
395,416 + 1.4
395,422 - 2.0
395,433 + -0.7
395,452 + -0.2
395,542 - 0.7
395,576 + 0.5
395,586 + -2.2
395,590 - -0.2
395,696 + 11691 mRNA_3323 0.15 1.3
395,707 - 11691 mRNA_3323 0.16 0.1
395,709 + 11691 mRNA_3323 0.16 -0.8
395,718 + 11691 mRNA_3323 0.17 1.7
396,203 - 11691 mRNA_3323 0.53 1.0
396,275 - 11691 mRNA_3323 0.58 0.4
396,446 + 11691 mRNA_3323 0.71 0.8
396,581 + 11691 mRNA_3323 0.81 -0.1
396,998 + 1.1
397,010 - 0.1
397,011 - 0.3
397,052 + 0.3
397,151 - -0.6
397,170 - 2.4
397,173 + -0.6
397,182 - -0.0
397,196 + -0.7
397,296 - 0.9
397,723 - 11692 mRNA_3324 0.37 0.7