Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3311

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363759 to 365853 11678 mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365993 to 367448 11679 mRNA_3312: 11680 - Hypothetical Protein, at 367824 to 368675 11680

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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365,271 - 11678 mRNA_3310 0.72 0.6
365,734 + 1.1
366,051 + 0.6
366,104 + -0.5
366,354 + 11679 mRNA_3311 0.25 -0.1
366,431 + 11679 mRNA_3311 0.30 0.7
366,434 - 11679 mRNA_3311 0.30 -2.6
366,474 - 11679 mRNA_3311 0.33 2.2
366,867 - 11679 mRNA_3311 0.60 -0.3
366,940 + 11679 mRNA_3311 0.65 -0.9
367,077 + 11679 mRNA_3311 0.74 -0.5
367,302 + 11679 mRNA_3311 0.90 1.2
367,340 + 0.2
367,394 - 0.5
367,508 - 1.0
367,517 - -1.6
367,523 - 2.1
367,529 - -0.2
367,534 - 1.2
367,550 - 1.7
367,550 + 0.3
367,835 - -0.4
368,002 - 11680 mRNA_3312 0.21 0.2
368,003 + 11680 mRNA_3312 0.21 -1.9
368,431 + 11680 mRNA_3312 0.71 -0.6