Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3307

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3306: 11674 - KOG0845 Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116), at 353822 to 355437 11674 mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355687 to 356880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357667 to 359935 11676

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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355,462 + -0.4
355,602 - 0.1
355,776 + 0.2
355,894 + 11675 mRNA_3307 0.17 0.5
356,031 + 11675 mRNA_3307 0.29 0.6
356,031 + 11675 mRNA_3307 0.29 0.9
356,052 + 11675 mRNA_3307 0.31 0.3
356,310 + 11675 mRNA_3307 0.52 -0.2
356,615 - 11675 mRNA_3307 0.78 -0.4
356,621 - 11675 mRNA_3307 0.78 1.2
356,623 - 11675 mRNA_3307 0.78 0.5
356,629 - 11675 mRNA_3307 0.79 1.2
356,755 - 11675 mRNA_3307 0.89 1.0
356,888 - 0.8
356,897 - -0.1
356,904 - 0.7
356,914 + 1.7
356,915 - 0.3
357,040 + 0.4
357,044 - 0.0
357,074 + -2.2
357,192 + 0.9
357,196 - 0.4
357,204 + 0.9
357,343 - 0.3
357,790 + -0.1