Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3295

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3294: 11662 - K20368 CNIH, ERV14 protein cornichon, at 319706 to 321575 11662 mRNA_3295: 11663 - K14324 SAP18 histone deacetylase complex subunit SAP18, at 321683 to 322724 11663 mRNA_3296: 11664 - Interpro PPR repeat family, at 323054 to 326094 11664

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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321,612 - 0.3
321,616 + 0.3
321,623 + -0.9
321,626 - 0.7
321,632 - 0.4
321,636 + 0.2
321,647 + -0.9
321,659 + -0.3
321,767 + -0.3
321,782 + 0.4
321,800 + 11663 mRNA_3295 0.11 0.6
321,801 + 11663 mRNA_3295 0.11 1.1
321,801 + 11663 mRNA_3295 0.11 0.6
321,816 + 11663 mRNA_3295 0.13 -1.8
321,818 - 11663 mRNA_3295 0.13 -0.1
321,906 - 11663 mRNA_3295 0.21 3.1
322,208 - 11663 mRNA_3295 0.50 1.0
322,360 - 11663 mRNA_3295 0.65 0.2
322,799 + 0.3
322,937 - -0.6
322,949 - -0.4
323,106 + -0.5
323,113 + 1.8