Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3281

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3280: 11648 - Hypothetical Protein, at 281870 to 282355 11648 mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282571 to 284691 11649 mRNA_3282: 11650 - KOG0023 Alcohol dehydrogenase, class V, at 285167 to 286436 11650

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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281,575 - 1.2
281,671 - 1.6
281,689 - 0.2
281,690 - -0.0
281,690 - 0.1
281,692 - 0.1
281,692 - -0.5
281,692 - 2.0
281,696 - 2.1
281,696 - -0.4
281,701 + 0.5
281,712 - -0.4
281,713 - -0.0
281,713 - 3.9
281,716 + 0.4
281,718 - 0.6
281,719 - -0.0
281,719 + -0.3
281,720 + 1.4
281,729 + 1.7
281,771 + -0.6
281,876 - 2.1
281,885 - 0.8
281,886 + -2.2
281,995 - 11648 mRNA_3280 0.26 0.1
282,289 - 11648 mRNA_3280 0.86 -1.4
282,292 + 11648 mRNA_3280 0.87 1.2
282,300 - 11648 mRNA_3280 0.88 -0.7
282,301 + 11648 mRNA_3280 0.89 0.8
282,301 - 11648 mRNA_3280 0.89 0.9
282,312 + 2.2
282,314 - 1.1
282,320 - 1.6
282,327 + 0.3
282,329 + -0.2
282,330 - -1.1
282,331 + 2.7
282,333 - -0.9
282,334 - -0.9
282,335 + -2.2
282,336 + -1.5
282,340 + -0.7
282,341 + 0.1
282,342 + -1.0
282,342 + -0.0
282,345 + -0.2
282,349 + -1.5
282,350 + -0.2
282,351 - -0.9
282,358 - 2.9
282,358 - -0.1
282,369 - -1.8
282,380 - -0.2
282,402 + 0.7
282,410 - 0.3
282,412 + -0.6
282,413 + 0.3
282,428 + 2.0
282,446 - 1.2
282,449 + -0.2
282,456 + -0.7
282,490 + -0.1
282,492 + -0.1
282,492 + -0.1
282,493 + 0.2
282,494 + -0.2
282,498 + 2.0
282,505 + 1.5
282,509 - -0.2
282,515 + 0.8
282,515 + 0.2
282,517 + -0.2
282,517 - -1.1
282,518 + 0.6
282,519 - 0.1
282,632 - 1.6
282,640 - -0.2
282,648 - 0.9
282,650 - -0.8
282,650 - 1.1
282,656 - 1.0
282,661 + 1.7
282,662 + 0.2
282,665 - 0.5
282,667 + -0.1
282,675 + 0.7
282,679 + 0.5
282,683 + 1.4
282,707 + -0.1
282,780 + -1.4
282,805 - 11649 mRNA_3281 0.11 -1.3
282,813 - 11649 mRNA_3281 0.11 -1.3
282,818 + 11649 mRNA_3281 0.12 -0.5
282,829 - 11649 mRNA_3281 0.12 -0.4
282,859 - 11649 mRNA_3281 0.14 0.7
282,860 - 11649 mRNA_3281 0.14 -0.7
282,870 - 11649 mRNA_3281 0.14 2.7
282,941 - 11649 mRNA_3281 0.17 -0.3
282,985 - 11649 mRNA_3281 0.20 1.0
282,995 + 11649 mRNA_3281 0.20 -0.8
283,158 + 11649 mRNA_3281 0.28 -0.3
283,418 + 11649 mRNA_3281 0.40 0.4
283,453 - 11649 mRNA_3281 0.42 1.2
283,709 - 11649 mRNA_3281 0.54 0.6
283,716 - 11649 mRNA_3281 0.54 -0.3
284,621 + 0.6
284,733 - -0.4
284,779 - 1.0
284,938 + -0.1
285,041 + -0.6
285,052 + 0.7
285,471 - 11650 mRNA_3282 0.24 -1.8
285,491 - 11650 mRNA_3282 0.26 0.9
285,608 - 11650 mRNA_3282 0.35 -0.3