Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3276

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265766 to 267917 11643 mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268106 to 268881 11644 mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269606 to 272171 11645

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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267,199 - 11643 mRNA_3275 0.67 0.4
267,485 - 11643 mRNA_3275 0.80 -0.4
267,611 + 11643 mRNA_3275 0.86 1.5
267,679 - 11643 mRNA_3275 0.89 1.0
267,679 - 11643 mRNA_3275 0.89 -0.7
267,805 - 0.4
268,219 - 11644 mRNA_3276 0.15 0.9
268,350 + 11644 mRNA_3276 0.31 -0.7
268,351 - 11644 mRNA_3276 0.32 0.2
268,364 + 11644 mRNA_3276 0.33 -0.6
268,486 - 11644 mRNA_3276 0.49 0.7
268,491 + 11644 mRNA_3276 0.50 0.9
268,624 - 11644 mRNA_3276 0.67 1.2
268,798 + 11644 mRNA_3276 0.89 2.1
268,884 - -0.5
268,899 + 0.3
268,908 + -0.9
268,916 - 0.8
268,917 - -0.5
268,918 + 0.2
268,938 + -0.4
268,953 - -0.5
268,953 + 0.4
268,957 + 1.0
268,963 - -0.7
269,083 - 0.5
269,096 + -0.9
269,098 + 2.3
269,099 - 0.1
269,101 - -0.5
269,103 - -1.1
269,105 - 0.8
269,106 - 1.1
269,112 + 1.5
269,116 - 0.5
269,118 + 0.0
269,130 + 2.3
269,238 + 0.5
269,240 + 0.8
269,378 + 0.7
269,393 - -0.7
269,401 + 0.8
269,409 - -0.2
269,409 + -1.5
269,411 - 0.1
269,518 - -0.9