Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3256

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3256: 11624 - K01681 ACO, acnA aconitate hydratase, at 224964 to 230364 11624 mRNA_3257: 11625 - K13869 SLC7A11 solute carrier family 7 (L-type amino acid transporter), member 11, at 230721 to 232745 11625

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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224,266 + -2.1
224,518 - 0.7
224,545 + 0.8
224,666 - 0.7
224,671 + 2.4
224,700 - -0.1
224,831 - 0.2
224,834 + 0.6
224,857 - 1.6
224,870 + -0.2
224,873 + -0.2
224,875 + 1.4
224,881 - -1.5
224,882 - 2.9
228,750 + 11624 mRNA_3256 0.70 -0.3
228,995 + 11624 mRNA_3256 0.75 0.6
229,019 - 11624 mRNA_3256 0.75 -0.2
229,044 - 11624 mRNA_3256 0.76 -0.4
229,304 - 11624 mRNA_3256 0.80 1.2
229,336 + 11624 mRNA_3256 0.81 1.1
229,498 - 11624 mRNA_3256 0.84 0.5
229,576 + 11624 mRNA_3256 0.85 3.1
229,586 - 11624 mRNA_3256 0.86 0.2
229,613 - 11624 mRNA_3256 0.86 0.5
229,774 + 11624 mRNA_3256 0.89 0.2
229,774 + 11624 mRNA_3256 0.89 -0.5
229,904 - 1.3
230,078 - 2.4
230,080 + 1.1
230,234 - -0.4
230,481 + -0.1
230,523 + 2.4
230,675 + 0.2
230,677 + -0.8
230,766 + 2.8
230,815 - 0.3
230,819 + 0.7
230,841 + -0.6
230,977 + 11625 mRNA_3257 0.13 0.9
231,153 + 11625 mRNA_3257 0.21 0.4
231,241 - 11625 mRNA_3257 0.26 2.4
231,250 - 11625 mRNA_3257 0.26 0.7
231,265 + 11625 mRNA_3257 0.27 0.2
231,285 + 11625 mRNA_3257 0.28 0.4
231,299 + 11625 mRNA_3257 0.29 1.0