Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3232

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599 mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600 mRNA_3233: 11601 - KOG1339 Aspartyl protease, at 161469 to 163797 11601

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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159,272 + 11599 mRNA_3231 0.80 -0.5
159,410 - 11599 mRNA_3231 0.88 -0.3
159,517 - -0.4
159,523 - 0.9
159,685 + -0.6
159,730 - -0.5
159,843 + -0.2
159,847 - 0.7
159,855 + -0.4
159,860 - 0.9
159,951 + 1.2
159,987 - -0.2
159,999 - -0.7
160,004 - -1.0
160,152 - 11600 mRNA_3232 0.18 3.2
160,305 + 11600 mRNA_3232 0.32 0.1
161,043 + 0.4
161,050 + -0.7
161,173 - 0.9
161,175 + -0.2
161,180 + -3.2
161,207 + 0.2
161,216 + 1.3
161,277 + 0.1
161,499 + 0.5
161,569 - -0.1
161,575 + -1.2
161,599 + -1.3
161,605 + -0.4
161,606 - 0.2
161,619 + -0.0
161,678 - -0.7
161,777 - 11601 mRNA_3233 0.13 1.8
161,794 - 11601 mRNA_3233 0.14 -0.8