Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3229

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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151,523 + 11596 mRNA_3228 0.56 1.2
151,598 + 11596 mRNA_3228 0.60 -0.9
151,667 + 11596 mRNA_3228 0.64 -0.2
151,694 - 11596 mRNA_3228 0.66 -1.1
151,708 - 11596 mRNA_3228 0.67 -0.7
151,708 - 11596 mRNA_3228 0.67 -0.6
151,708 - 11596 mRNA_3228 0.67 1.5
151,708 + 11596 mRNA_3228 0.67 -1.0
151,709 + 11596 mRNA_3228 0.67 0.7
151,709 - 11596 mRNA_3228 0.67 2.1
151,709 - 11596 mRNA_3228 0.67 1.8
151,713 + 11596 mRNA_3228 0.67 3.2
151,765 + 11596 mRNA_3228 0.70 0.5
151,849 + 11596 mRNA_3228 0.75 -2.4
152,208 + 0.7
152,295 - -0.6
152,299 - 1.4
152,321 - 1.0
152,344 + 0.1
152,557 + -0.4
152,591 + 0.4
152,600 + 1.5
152,679 - 1.0
152,720 - 11597 mRNA_3229 0.10 0.7
152,993 - 11597 mRNA_3229 0.24 -0.2
153,047 - 11597 mRNA_3229 0.26 -0.4
153,166 - 11597 mRNA_3229 0.32 0.4
153,179 + 11597 mRNA_3229 0.33 -0.5
153,385 + 11597 mRNA_3229 0.43 -0.4
153,593 + 11597 mRNA_3229 0.53 2.7
153,881 - 11597 mRNA_3229 0.68 -0.1
153,912 + 11597 mRNA_3229 0.69 1.0
154,487 - 0.1
154,897 - -0.1
154,921 - -0.9
154,927 - -0.1
155,030 - -0.3
155,044 - -0.1
155,076 + -2.6
155,192 - -0.8
155,211 + 0.7
155,214 + -1.1
155,336 - -0.1
155,344 - 1.3
155,348 - -0.3
155,350 - -0.6
155,350 + 0.5
155,352 - 0.5
155,356 + 1.0
155,363 - -0.1
155,368 - -1.9
155,370 - 0.6
155,371 - -0.5
155,373 + -0.3
155,375 - 0.6
155,376 + 1.4
155,378 + -0.9
155,378 + 0.4
155,383 + 0.4
155,419 - 1.3