Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3189

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3188: 11556 - Hypothetical Protein, at 45440 to 45769 11556 mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46599 to 47566 11557 mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47974 to 50099 11558

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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45,630 + 11556 mRNA_3188 0.58 0.4
45,652 - 11556 mRNA_3188 0.64 0.5
45,778 - 2.1
45,808 + 2.6
45,819 - 0.5
45,822 - -0.6
45,823 + -0.3
45,897 + 2.0
45,907 + 0.7
45,919 + -0.2
45,919 + 0.4
46,029 - 0.3
46,039 + 1.3
46,063 - 1.5
46,406 + 0.8
46,487 - 2.1
46,632 - 0.2
46,674 - 0.7
46,793 - 11557 mRNA_3189 0.20 1.1
46,952 + 11557 mRNA_3189 0.36 -1.0
46,981 - 11557 mRNA_3189 0.39 0.3
47,066 + 11557 mRNA_3189 0.48 0.4
47,406 + 11557 mRNA_3189 0.83 -0.3
47,485 - 1.3
47,532 + 0.3
47,659 + -1.6
47,669 + 0.2
47,704 + 0.2
47,789 - 2.8
47,790 + 2.1
47,797 + 2.0
47,813 + -0.0
47,948 + 0.5
47,983 + 0.8
47,985 - -1.6
48,088 + 1.0
48,108 + 0.1
48,260 + 11558 mRNA_3190 0.13 2.1
48,260 - 11558 mRNA_3190 0.13 0.2
48,263 + 11558 mRNA_3190 0.14 0.1
48,269 + 11558 mRNA_3190 0.14 -1.3
48,405 - 11558 mRNA_3190 0.20 -2.3
48,434 + 11558 mRNA_3190 0.22 -0.2
48,549 + 11558 mRNA_3190 0.27 1.1