Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3185

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3184: 11552 - K13220 WBP4, FBP21 WW domain-binding protein 4, at 38712 to 39951 11552 mRNA_3185: 11553 - KOG1577 Aldo/keto reductase family proteins, at 40241 to 41550 11553 mRNA_3186: 11554 - KOG4444 Peroxisomal assembly protein PEX3, at 41643 to 43993 11554

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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39,828 + 0.1
39,839 + -2.4
40,095 + 0.2
40,102 + -0.1
40,148 - 0.0
40,149 - 0.1
40,150 - 1.0
40,150 + 0.6
40,151 + 3.0
40,153 - 1.5
40,170 - -0.8
40,172 - 1.8
40,173 - 0.3
40,174 + 0.7
40,174 + 0.1
40,179 + 1.8
40,181 - 0.3
40,195 + 0.5
40,261 - -2.5
40,303 - -0.2
40,317 + 0.1
40,321 - -0.5
40,327 + 0.6
40,344 + 3.0
40,345 - 0.1
40,459 + 11553 mRNA_3185 0.17 0.1
40,471 - 11553 mRNA_3185 0.18 0.5
40,628 - 11553 mRNA_3185 0.30 1.5
40,640 + 11553 mRNA_3185 0.30 -0.4
40,751 + 11553 mRNA_3185 0.39 0.2
40,765 + 11553 mRNA_3185 0.40 1.6
40,768 + 11553 mRNA_3185 0.40 -0.3
40,776 - 11553 mRNA_3185 0.41 -0.6
40,786 - 11553 mRNA_3185 0.42 1.3
40,921 + 11553 mRNA_3185 0.52 2.3
41,055 - 11553 mRNA_3185 0.62 -0.3
41,231 + 11553 mRNA_3185 0.76 -0.4
41,345 + 11553 mRNA_3185 0.84 0.9
41,471 - 0.9
41,655 + -1.8