Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3182

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549 mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33172 to 34723 11550 mRNA_3183: 11551 - HMMPfam-Cohesin loading factor-PF10345, at 34955 to 37755 11551

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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32,444 + 11549 mRNA_3181 0.85 -0.6
32,630 - 0.5
32,646 - -0.3
32,777 + -0.2
32,780 - -0.8
32,912 + 2.2
32,929 + 0.7
32,933 - 2.4
32,985 - 0.2
32,996 + 1.2
32,999 + -0.3
33,009 - -2.4
33,011 + 1.9
33,092 - 0.8
33,150 - 0.4
33,315 - 2.4
33,325 + 0.1
33,326 + 0.3
33,328 - 11550 mRNA_3182 0.10 0.1
33,329 + 11550 mRNA_3182 0.10 0.5
33,422 + 11550 mRNA_3182 0.16 0.4
33,422 + 11550 mRNA_3182 0.16 0.4
33,424 - 11550 mRNA_3182 0.16 1.3
33,590 + 11550 mRNA_3182 0.27 0.4
33,593 - 11550 mRNA_3182 0.27 0.8
33,596 - 11550 mRNA_3182 0.27 -0.5
33,602 + 11550 mRNA_3182 0.28 -0.6
33,602 + 11550 mRNA_3182 0.28 1.6
33,623 + 11550 mRNA_3182 0.29 -0.0
33,691 + 11550 mRNA_3182 0.33 1.1
33,691 + 11550 mRNA_3182 0.33 0.1
33,729 + 11550 mRNA_3182 0.36 -0.4
33,731 + 11550 mRNA_3182 0.36 0.7
33,870 + 11550 mRNA_3182 0.45 -0.4
33,885 + 11550 mRNA_3182 0.46 1.3
34,039 + 11550 mRNA_3182 0.56 0.4
34,047 - 11550 mRNA_3182 0.56 0.0
34,155 - 11550 mRNA_3182 0.63 -0.7
34,161 + 11550 mRNA_3182 0.64 -1.1
34,172 - 11550 mRNA_3182 0.64 2.0
34,274 + 11550 mRNA_3182 0.71 -0.0
34,342 - 11550 mRNA_3182 0.75 1.8
34,466 + 11550 mRNA_3182 0.83 2.6
34,477 + 11550 mRNA_3182 0.84 1.4
34,486 + 11550 mRNA_3182 0.85 0.7
34,631 - 2.5
34,756 - 1.1
34,778 - -1.2
34,877 - 0.8
34,900 + 1.6
35,010 - 0.9
35,376 - 11551 mRNA_3183 0.15 0.3