Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3181

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29208 to 30655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549 mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33172 to 34723 11550

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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30,145 - 11548 mRNA_3180 0.65 0.2
30,182 + 11548 mRNA_3180 0.67 -1.9
30,281 + 11548 mRNA_3180 0.74 -0.7
30,285 - 11548 mRNA_3180 0.74 2.3
30,341 + 11548 mRNA_3180 0.78 0.1
30,446 - 11548 mRNA_3180 0.85 0.7
30,583 - 1.3
30,602 - 1.4
30,725 + 0.4
30,812 + -0.0
30,890 - -0.8
30,897 + 0.1
31,018 - 1.1
31,022 - -0.1
31,272 + 11549 mRNA_3181 0.17 1.1
31,364 - 11549 mRNA_3181 0.22 0.5
31,756 - 11549 mRNA_3181 0.45 0.3
31,759 - 11549 mRNA_3181 0.45 0.2
31,938 + 11549 mRNA_3181 0.56 -0.9
32,444 + 11549 mRNA_3181 0.85 -0.6
32,630 - 0.5
32,646 - -0.3
32,777 + -0.2
32,780 - -0.8
32,912 + 2.2
32,929 + 0.7
32,933 - 2.4
32,985 - 0.2
32,996 + 1.2
32,999 + -0.3
33,009 - -2.4
33,011 + 1.9
33,092 - 0.8
33,150 - 0.4
33,315 - 2.4
33,325 + 0.1
33,326 + 0.3
33,328 - 11550 mRNA_3182 0.10 0.1
33,329 + 11550 mRNA_3182 0.10 0.5
33,422 + 11550 mRNA_3182 0.16 0.4
33,422 + 11550 mRNA_3182 0.16 0.4
33,424 - 11550 mRNA_3182 0.16 1.3
33,590 + 11550 mRNA_3182 0.27 0.4
33,593 - 11550 mRNA_3182 0.27 0.8
33,596 - 11550 mRNA_3182 0.27 -0.5
33,602 + 11550 mRNA_3182 0.28 -0.6
33,602 + 11550 mRNA_3182 0.28 1.6
33,623 + 11550 mRNA_3182 0.29 -0.0
33,691 + 11550 mRNA_3182 0.33 1.1
33,691 + 11550 mRNA_3182 0.33 0.1