Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3178

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22085 to 24622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25091 to 26696 11546 mRNA_3179: 11547 - Hypothetical Protein, at 26940 to 28412 11547

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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24,234 - 11545 mRNA_3177 0.85 -0.7
24,650 + 0.8
24,736 + 0.6
24,877 + 1.9
25,088 + 0.1
25,294 + 11546 mRNA_3178 0.13 0.4
25,308 + 11546 mRNA_3178 0.14 1.8
25,401 - 11546 mRNA_3178 0.19 0.3
25,575 + 11546 mRNA_3178 0.30 0.8
25,692 + 11546 mRNA_3178 0.37 -0.0
25,909 + 11546 mRNA_3178 0.51 0.7
26,027 + 11546 mRNA_3178 0.58 -0.4
26,273 + 11546 mRNA_3178 0.74 2.0
26,443 - 11546 mRNA_3178 0.84 0.1
26,475 - 11546 mRNA_3178 0.86 1.3
26,610 + 1.6
26,737 + 1.2
26,749 + 0.6
26,757 + -0.2
26,760 - 1.0
26,769 + -1.0
26,878 - 0.6
26,884 + 0.2
26,896 + 0.4
26,896 - -1.3
27,029 - -0.4
27,030 + -0.1
27,046 - 1.1
27,397 - 11547 mRNA_3179 0.31 -0.6