Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3175

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10754 to 11960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12407 to 17406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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11,991 + -1.1
12,077 + -1.1
12,411 + -0.1
12,584 + 0.4
12,995 + 11543 mRNA_3175 0.12 -0.8
13,364 - 11543 mRNA_3175 0.19 -1.3
13,388 - 11543 mRNA_3175 0.20 2.0
13,408 + 11543 mRNA_3175 0.20 2.3
13,424 + 11543 mRNA_3175 0.20 -1.9
13,509 - 11543 mRNA_3175 0.22 1.6
13,543 + 11543 mRNA_3175 0.23 -0.3
13,605 + 11543 mRNA_3175 0.24 0.7
13,714 - 11543 mRNA_3175 0.26 -0.8
13,818 + 11543 mRNA_3175 0.28 0.2
13,845 - 11543 mRNA_3175 0.29 -0.1
14,006 - 11543 mRNA_3175 0.32 1.3
14,112 + 11543 mRNA_3175 0.34 0.7
14,133 + 11543 mRNA_3175 0.35 0.1
14,250 - 11543 mRNA_3175 0.37 -0.9
14,270 - 11543 mRNA_3175 0.37 -0.7
14,290 + 11543 mRNA_3175 0.38 0.7
14,290 + 11543 mRNA_3175 0.38 -0.5
14,292 - 11543 mRNA_3175 0.38 0.2
14,387 - 11543 mRNA_3175 0.40 -0.3
14,397 - 11543 mRNA_3175 0.40 -0.0
14,425 - 11543 mRNA_3175 0.40 0.4
14,599 + 11543 mRNA_3175 0.44 -1.2
14,713 - 11543 mRNA_3175 0.46 0.8
14,956 + 11543 mRNA_3175 0.51 -2.6
15,195 - 11543 mRNA_3175 0.56 1.6
15,196 + 11543 mRNA_3175 0.56 0.5
15,249 + 11543 mRNA_3175 0.57 0.3
15,288 - 11543 mRNA_3175 0.58 0.2
15,289 + 11543 mRNA_3175 0.58 0.4
15,548 - 11543 mRNA_3175 0.63 0.7
15,560 + 11543 mRNA_3175 0.63 -0.8
15,848 + 11543 mRNA_3175 0.69 -0.4
16,181 + 11543 mRNA_3175 0.75 2.8
16,270 - 11543 mRNA_3175 0.77 -0.0
16,290 + 11543 mRNA_3175 0.78 -1.2
16,379 - 11543 mRNA_3175 0.79 0.7
16,389 + 11543 mRNA_3175 0.80 1.8
16,414 + 11543 mRNA_3175 0.80 1.4
16,869 - 11543 mRNA_3175 0.89 0.3
17,120 - -0.3
17,136 - 3.5
17,151 - -1.5
17,239 + 0.9
17,276 - -2.0
17,290 - -0.2
17,299 + 0.4
17,310 + 0.2
17,316 - -2.0
17,445 - -0.1
17,463 + -0.6
17,479 + 3.0
17,581 - 1.3
17,605 - -0.4
17,607 - -0.1
17,616 + 0.4
17,631 - 1.5
17,712 - 0.9
17,739 - -0.4
17,742 - -1.5
17,772 - -1.4