Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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12 + 0.8
12 + 0.9
15 + 1.0
16 + 0.5
18 + 2.5
22 + -1.9
25 + 1.0
57 - -2.0
61 - 1.0
62 + 0.3
62 + 0.1
66 + 1.2
72 + 2.2
72 + -0.5
72 + 1.1
75 + -0.6
78 - 0.8
105 + -0.5
110 - -2.1
114 + 0.3
115 + 1.1
118 + 1.0
122 + -0.4
122 - 0.3
124 + 0.7
135 + -1.0
147 + -0.4
157 + -0.2
161 + -0.6
168 + -1.5
174 + -0.5
177 - 0.4
228 + 3.1
247 + 0.9
252 - 1.6
253 - 0.4
255 + 0.9
258 + -0.3
264 - 1.1
269 + -0.5
269 - 0.7
274 + -0.5
275 - -0.7
277 + -1.8
280 + 2.7
280 + -2.5
283 - 0.3
285 - 0.0
287 + 1.4
287 + 0.4
288 + 0.7
292 - 0.4
293 + 1.1
298 + 0.9
305 - -0.4
314 + 0.8
320 + 1.1
368 + 2.1
370 - -2.5
372 + 0.3
382 + 0.7
384 + 0.2
391 + -0.6
391 - 2.5
397 + 1.8
397 - 1.1
402 + -0.5
405 + 0.5
423 - 0.6
430 + 1.2
440 + -0.1
446 + -0.1
470 + -0.6
524 + 0.6
532 + 0.5
545 - 0.2
557 + 1.5
569 + 1.6
570 - 0.0
583 + 0.6
584 + -1.4
603 - -0.6
603 + 1.0
634 - 11537 mRNA_3169 0.11 1.2
636 + 11537 mRNA_3169 0.11 1.4
646 + 11537 mRNA_3169 0.12 0.6
661 + 11537 mRNA_3169 0.13 -0.2
667 + 11537 mRNA_3169 0.14 -0.4
698 + 11537 mRNA_3169 0.17 0.2
704 - 11537 mRNA_3169 0.18 1.5
705 - 11537 mRNA_3169 0.18 -1.6
721 - 11537 mRNA_3169 0.19 0.4
725 + 11537 mRNA_3169 0.20 -1.2
738 - 11537 mRNA_3169 0.21 1.1
849 + 11537 mRNA_3169 0.32 1.8
871 + 11537 mRNA_3169 0.34 1.6
883 + 11537 mRNA_3169 0.35 0.3
894 + 11537 mRNA_3169 0.37 0.3
895 + 11537 mRNA_3169 0.37 1.3
922 + 11537 mRNA_3169 0.39 1.6
965 - 11537 mRNA_3169 0.44 -0.6
1,012 - 11537 mRNA_3169 0.48 -1.0
1,026 + 11537 mRNA_3169 0.50 0.9
1,026 + 11537 mRNA_3169 0.50 -0.8
1,105 + 11537 mRNA_3169 0.58 -0.7
1,123 + 11537 mRNA_3169 0.60 -3.6
1,141 + 11537 mRNA_3169 0.61 1.8
1,142 + 11537 mRNA_3169 0.61 3.6
1,165 + 11537 mRNA_3169 0.64 -0.0
1,174 - 11537 mRNA_3169 0.65 1.0
1,174 + 11537 mRNA_3169 0.65 2.0
1,259 + 11537 mRNA_3169 0.73 0.5
1,265 + 11537 mRNA_3169 0.74 -0.3
1,268 + 11537 mRNA_3169 0.74 -0.2
1,269 - 11537 mRNA_3169 0.74 0.4
1,288 - 11537 mRNA_3169 0.76 2.1
1,297 + 11537 mRNA_3169 0.77 -1.0
1,303 - 11537 mRNA_3169 0.78 0.1
1,399 + 11537 mRNA_3169 0.87 0.1
1,412 - 11537 mRNA_3169 0.88 0.5
1,419 - 11537 mRNA_3169 0.89 0.3
1,423 - 11537 mRNA_3169 0.90 -0.9
1,429 - 0.7
1,453 + 0.2
1,459 + 0.1
1,459 + -0.2
1,460 - 0.7
1,461 + 1.4
1,462 + 1.3
1,467 + 1.2
1,470 - 3.5
1,474 - 0.7
1,485 + -0.8
1,520 + 0.5
1,523 + 0.8
1,531 - 1.2
1,537 + 1.7
1,541 + -1.7
1,562 + -0.5
1,567 + 0.2
1,572 + -1.3
1,582 - 1.9
1,584 - 0.9
1,589 + -0.8
1,596 - 0.4
1,601 - -2.1
1,602 + -0.1
1,605 + -1.5
1,609 + -0.3
1,616 + 0.7
1,636 + 0.8
1,654 + 1.1
1,656 - 3.7
1,666 + 0.4
1,675 - -1.3
1,682 - 0.6
1,697 - 0.5
1,709 + 0.0
1,709 - 1.0
1,711 + -0.7
1,718 - -0.5
1,719 + -0.6
1,722 - 0.6
1,723 + 0.8
1,725 - 0.2
1,725 - 1.9
1,727 + 0.9
1,730 + 0.3
1,731 + -0.6
1,732 + 1.0
1,732 + 0.3
1,734 + -2.6
1,734 + 1.8
1,734 + 2.3
1,739 - 0.8
1,740 + -0.8
1,744 - -0.4
1,747 + 0.3
1,749 + 1.4
1,759 + -0.5
1,759 + 1.3
1,759 + -0.3
1,761 + 1.8
1,763 + 1.4
1,765 + 1.3
1,767 + 0.6
1,769 + 0.2
1,772 + 0.5
1,772 + 0.5
1,774 + 2.3
1,774 + -0.9
1,775 + 0.6
1,776 - 0.5
1,776 + 0.3
1,777 + 0.6
1,778 + 1.1
1,778 - -0.2
1,781 - -0.1
1,783 - 1.3
1,783 - 0.7
1,783 - 2.9
1,783 - -0.1
1,784 + 0.9
1,789 + 0.1
1,789 - -0.2
1,791 + 0.3
1,792 + 1.6
1,793 + -0.8
1,795 + -0.7
1,796 + 0.6
1,796 - 0.8
1,798 + 1.5
1,800 + 1.3
1,801 + 4.5
1,805 + 0.3
1,805 + -0.7
1,807 + 0.4
1,813 - -1.0
1,814 + 0.9
1,814 + -1.7
1,818 - -0.9
1,851 - 0.7
1,874 + 0.1
1,881 - 1.2
1,885 - -0.3
1,891 - 1.9
1,896 - 0.2
1,912 + -0.3
1,912 + 0.0
1,914 - 1.1
1,916 - -0.9
1,917 - -0.3
1,919 + 3.0
1,922 - -0.3
1,923 - 0.8
1,934 - 0.6
1,935 + 0.7
1,938 - 0.3
1,938 - 0.6
1,940 - -0.2
1,941 + 1.6
1,941 + 1.5
1,942 + 0.8
1,943 - -0.1
1,944 + 0.8
1,944 - 2.0
1,945 - 1.2
1,945 + 0.0
1,946 - 0.6
1,947 + 0.5
1,960 - 0.2
1,968 + 0.9
1,980 + -2.2
2,015 + 2.2
2,067 - 2.2
2,081 - -1.7
2,091 + 0.2
2,220 + 0.3
2,229 - 2.0
2,235 - -1.3
2,237 - -0.8
2,242 + 2.4
2,242 - -0.0
2,245 - -0.0
2,248 - 0.9
2,251 + -2.6
2,254 - 0.5
2,261 + -1.3
2,262 - 1.1
2,266 + 2.5
2,268 + 0.0
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 -1.5
2,404 + 11538 mRNA_3170 0.22 -1.2
2,414 + 11538 mRNA_3170 0.23 -0.8
2,420 - 11538 mRNA_3170 0.23 2.9
2,439 + 11538 mRNA_3170 0.25 2.6
2,446 + 11538 mRNA_3170 0.26 2.1
2,470 - 11538 mRNA_3170 0.28 -0.1
2,516 - 11538 mRNA_3170 0.32 0.5