Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3152

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439382 to 440661 11521

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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437,781 + 11519 mRNA_3151 0.80 0.2
437,786 - 11519 mRNA_3151 0.80 0.2
437,793 + 11519 mRNA_3151 0.81 -1.3
437,803 - 11519 mRNA_3151 0.81 0.6
437,811 + 11519 mRNA_3151 0.82 0.7
437,818 - 11519 mRNA_3151 0.82 0.8
437,818 - 11519 mRNA_3151 0.82 -0.1
437,819 + 11519 mRNA_3151 0.82 1.7
437,820 - 11519 mRNA_3151 0.82 1.0
437,825 - 11519 mRNA_3151 0.83 0.2
437,826 - 11519 mRNA_3151 0.83 1.6
437,828 - 11519 mRNA_3151 0.83 1.3
437,828 - 11519 mRNA_3151 0.83 0.9
437,830 - 11519 mRNA_3151 0.83 0.2
437,832 + 11519 mRNA_3151 0.83 0.5
437,833 - 11519 mRNA_3151 0.83 1.4
437,835 - 11519 mRNA_3151 0.83 0.9
437,836 - 11519 mRNA_3151 0.83 1.3
437,836 + 11519 mRNA_3151 0.83 2.3
437,836 + 11519 mRNA_3151 0.83 -1.5
437,839 - 11519 mRNA_3151 0.83 1.7
437,840 - 11519 mRNA_3151 0.83 0.7
437,840 - 11519 mRNA_3151 0.83 -0.0
437,842 - 11519 mRNA_3151 0.84 0.2
437,843 + 11519 mRNA_3151 0.84 0.8
437,844 - 11519 mRNA_3151 0.84 1.6
437,845 + 11519 mRNA_3151 0.84 1.7
437,846 - 11519 mRNA_3151 0.84 -0.0
437,847 + 11519 mRNA_3151 0.84 0.6
437,847 + 11519 mRNA_3151 0.84 -0.0
437,847 + 11519 mRNA_3151 0.84 -0.9
437,847 + 11519 mRNA_3151 0.84 1.2
437,848 + 11519 mRNA_3151 0.84 -0.6
437,850 - 11519 mRNA_3151 0.84 0.1
437,850 + 11519 mRNA_3151 0.84 -0.8
437,851 + 11519 mRNA_3151 0.84 -0.2
437,851 + 11519 mRNA_3151 0.84 0.2
437,852 + 11519 mRNA_3151 0.84 2.0
437,853 + 11519 mRNA_3151 0.84 0.3
437,853 + 11519 mRNA_3151 0.84 0.6
437,853 - 11519 mRNA_3151 0.84 -0.1
437,854 - 11519 mRNA_3151 0.84 -0.9
437,855 + 11519 mRNA_3151 0.84 0.8
437,855 + 11519 mRNA_3151 0.84 0.5
437,856 + 11519 mRNA_3151 0.84 0.1
437,857 + 11519 mRNA_3151 0.84 1.9
437,862 - 11519 mRNA_3151 0.85 -1.0
437,866 + 11519 mRNA_3151 0.85 -0.4
437,867 + 11519 mRNA_3151 0.85 -0.5
437,867 + 11519 mRNA_3151 0.85 1.8
437,868 - 11519 mRNA_3151 0.85 3.6
437,870 + 11519 mRNA_3151 0.85 1.1
437,870 - 11519 mRNA_3151 0.85 0.4
437,870 + 11519 mRNA_3151 0.85 -0.2
437,872 + 11519 mRNA_3151 0.85 0.7
437,873 - 11519 mRNA_3151 0.85 -0.0
437,873 + 11519 mRNA_3151 0.85 1.5
437,874 + 11519 mRNA_3151 0.86 3.3
437,874 + 11519 mRNA_3151 0.86 0.8
437,884 + 11519 mRNA_3151 0.86 -0.4
437,897 + 11519 mRNA_3151 0.87 -0.4
437,905 - 11519 mRNA_3151 0.87 1.3
437,914 - 11519 mRNA_3151 0.88 0.7
437,920 + 11519 mRNA_3151 0.88 0.7
437,924 - 11519 mRNA_3151 0.89 -0.7
437,927 - 11519 mRNA_3151 0.89 -0.7
437,927 + 11519 mRNA_3151 0.89 -1.9
437,936 + 11519 mRNA_3151 0.89 0.4
437,936 - 11519 mRNA_3151 0.89 -0.0
437,940 + 11519 mRNA_3151 0.90 1.1
437,951 - 2.9
437,958 + 1.2
437,996 + -1.5
438,035 - 1.7
438,041 - -0.1
438,047 - -0.4
438,050 + -1.4
438,051 - 1.0
438,053 + 1.0
438,058 - -0.4
438,058 - 0.4
438,059 - -0.1
438,061 - -0.6
438,061 + -1.8
438,061 + -0.3
438,062 + -1.7
438,064 + -0.4
438,066 - -0.1
438,067 - -0.7
438,067 - -0.6
438,069 - 0.6
438,070 - 0.6
438,070 + -1.2
438,070 - -0.7
438,072 - 1.2
438,076 + 0.6
438,077 + 2.7
438,077 + 0.7
438,080 - -0.3
438,080 + 1.0
438,082 - 1.0
438,083 + -1.1
438,085 + 0.9
438,089 - 3.1
438,089 + 1.1
438,090 - 0.3
438,091 - 0.6
438,094 + 0.2
438,098 + -0.2
438,106 + -0.2
438,107 + -0.9
438,112 + 1.5
438,112 + -0.4
438,124 + 0.0
438,131 - 1.5
438,142 - -0.2
438,148 - -0.5
438,150 - 0.8
438,161 + 1.8
438,168 - 1.0
438,180 - -0.5
438,180 + 1.4
438,181 + 2.8
438,193 + 0.7
438,195 - 3.5
438,208 - 2.0
438,208 + 2.6
438,227 + 0.5
438,231 - 0.7
438,233 - -0.1
438,234 - -1.5
438,236 + -1.0
438,237 - 0.1
438,239 + 0.6
438,242 + 0.1
438,242 + -0.6
438,252 - 1.2
438,253 - 0.4
438,257 - 1.1
438,257 - 0.7
438,259 + -0.1
438,259 + -0.8
438,263 - 1.6
438,264 + 1.1
438,266 - -1.4
438,282 + -0.0
438,283 - 2.3
438,287 - -0.2
438,294 - 0.2
438,303 - -0.8
438,306 + -0.2
438,316 - -1.9
438,319 + -0.3
438,320 - -0.6
438,326 + -0.1
438,330 - 0.3
438,341 + 0.8
438,344 - -1.2
438,346 - 0.2
438,347 - 1.3
438,361 - 0.3
438,368 + -0.4
438,380 - -0.5
438,414 - 0.1
438,426 - -0.2
438,436 - 0.2
438,446 + 1.4
438,469 - 2.1
438,471 - -2.2
438,472 + 0.4
438,478 - -0.7
438,503 + 0.7
438,542 - 0.7
438,552 + -0.2
438,560 - -0.7
438,603 - -0.3
438,612 - -0.6
438,614 - 0.7
438,629 + 1.2
438,643 + -1.2
438,645 + -0.5
438,655 - 2.1
438,662 - 2.6
438,778 - 2.3
438,784 + -0.1
438,844 - 11520 mRNA_3152 0.17 3.7
438,898 + 11520 mRNA_3152 0.32 1.0
438,920 + 11520 mRNA_3152 0.38 0.0
438,952 - 11520 mRNA_3152 0.46 1.5
439,046 - 11520 mRNA_3152 0.72 -0.3
439,067 - 11520 mRNA_3152 0.77 1.0
439,080 + 11520 mRNA_3152 0.81 -1.0
439,089 + 11520 mRNA_3152 0.83 -0.1
439,199 - -0.0
439,200 + 1.0
439,201 - 1.5
439,202 + 0.5
439,203 - 0.1
439,203 + -0.5
439,204 + -0.5
439,344 - 0.9
439,350 + 1.2
439,485 + 1.1
439,645 + 11521 mRNA_3153 0.21 0.3
439,674 + 11521 mRNA_3153 0.23 -0.1
439,785 - 11521 mRNA_3153 0.31 -0.2
439,787 + 11521 mRNA_3153 0.32 1.1
439,792 - 11521 mRNA_3153 0.32 -1.5
440,096 + 11521 mRNA_3153 0.56 -0.7