Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3150

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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434,112 + 1.6
434,119 - 0.9
434,238 - -0.3
434,255 - 1.5
434,278 - -0.4
434,296 - -0.1
434,379 + -1.6
434,393 + 3.4
434,395 + 0.3
434,395 - 0.5
434,399 - 1.0
434,400 - -1.5
434,514 - -0.7
434,518 + 1.2
434,524 + 0.0
434,531 - 1.1
434,541 + 3.3
434,544 + 0.4
434,544 - 1.3
434,644 - 0.2
434,665 + -1.0
434,671 + 0.5
434,672 - -0.9
434,675 - -1.3
434,677 - 0.7
434,689 - -0.5
434,689 + -0.6
434,691 + 0.1
434,694 + 0.0
434,699 + 0.9
434,720 - 0.1
434,757 - 0.8
434,817 - 0.8
434,819 + -0.0
434,836 + 2.0
434,865 + 1.0
434,978 + 1.4
434,983 - -0.1
434,992 + 0.4
434,997 - -0.1
435,105 - 0.2
435,109 - 0.2
435,123 - -0.9
435,407 + 11518 mRNA_3150 0.29 0.2
435,437 + 11518 mRNA_3150 0.32 -1.1
435,442 + 11518 mRNA_3150 0.32 0.7
435,469 + 11518 mRNA_3150 0.34 0.2
435,484 + 11518 mRNA_3150 0.35 0.5
435,485 + 11518 mRNA_3150 0.35 0.2
435,564 - 11518 mRNA_3150 0.41 -0.2
435,571 + 11518 mRNA_3150 0.42 -0.1
435,684 - 11518 mRNA_3150 0.51 -1.4
435,702 + 11518 mRNA_3150 0.52 2.6
435,718 - 11518 mRNA_3150 0.53 0.7
435,843 - 11518 mRNA_3150 0.63 0.7
435,865 + 11518 mRNA_3150 0.65 1.3
435,979 - 11518 mRNA_3150 0.73 0.1
436,001 - 11518 mRNA_3150 0.75 2.1
436,102 - 11518 mRNA_3150 0.83 0.5
436,241 + 2.7
436,445 + -0.4
436,643 + -0.1
436,712 - 11519 mRNA_3151 0.14 -0.9
436,734 - 11519 mRNA_3151 0.16 0.6
436,799 + 11519 mRNA_3151 0.20 1.5
436,895 + 11519 mRNA_3151 0.25 2.3
436,901 + 11519 mRNA_3151 0.26 0.9
437,009 - 11519 mRNA_3151 0.32 -0.2
437,041 + 11519 mRNA_3151 0.34 -0.0
437,214 - 11519 mRNA_3151 0.45 -1.0
437,264 + 11519 mRNA_3151 0.48 2.7
437,296 + 11519 mRNA_3151 0.50 0.4
437,300 + 11519 mRNA_3151 0.50 -0.5
437,300 - 11519 mRNA_3151 0.50 -0.0
437,303 - 11519 mRNA_3151 0.50 -1.4
437,315 - 11519 mRNA_3151 0.51 0.4